CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0223400-01	Rice	cytosol, plasma membrane	91.04	91.04
GSMUA_AchrUn_...	Banana	cytosol	89.92	90.17
TraesCS4A01G063800.1	Wheat	cytosol	89.08	89.83
TraesCS4D01G240700.1	Wheat	cytosol	88.8	89.55
TraesCS4B01G240900.1	Wheat	cytosol, golgi	88.8	89.55
GSMUA_Achr3P07420_001	Banana	cytosol, plasma membrane	88.8	89.04
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	88.24	88.48
VIT_14s0006g00350.t01	Wine grape	cytosol	87.39	87.64
KXG30808	Sorghum	cytosol	86.83	87.08
KRH30929	Soybean	endoplasmic reticulum	86.27	86.52
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	85.99	86.24
KRH17323	Soybean	cytosol	85.43	85.67
Zm00001d048050_P004	Maize	cytosol	82.35	85.22
Zm00001d028260_P005	Maize	cytosol	92.72	84.65
KRH72976	Soybean	cytosol	84.31	84.55
HORVU4Hr1G066860.5	Barley	plasma membrane	88.52	82.51
OQU91109	Sorghum	cytosol	83.75	81.47
KRH72975	Soybean	cytosol	52.38	73.91
KXG27313	Sorghum	plastid	79.27	65.36
KRH17322	Soybean	cytosol	44.82	63.49

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EntrezGene:8056868	UniProt:B5B9V8	ProteinID:EER92622.1	EMBL:FM196538	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site
InterPro:IPR036651	EnsemblPlants:OQU92979	ProteinID:OQU92979	ProteinID:OQU92979.1	PFAM:PF00120	PFAM:PF03951
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF78	SMART:SM01230	EnsemblPlantsGene:SORBI_3001G451500
SUPFAM:SSF54368	SUPFAM:SSF55931	unigene:Sbi.1111	UniParc:UPI000179A1BF	RefSeq:XP_002465624.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:72837460..72841598

Molecular Weight (calculated)

39242.2 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.440

Length

357 amino acids

Sequence
(BLAST)

001: MASLTDLVNL DLSDCTDKII AEYIWIGGSG IDLRSKARTV KGPITDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRKGDNILV MCDCYTPQGE
101: PIPTNKRYNA AKVFSHPDVA AEVPWYGIEQ EYTLLQKDVN WPLGWPVGGY PGPQGPYYCA AGADKAFGRD VVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDEIWVARYI LERITEIAGI VLSLDPKPIQ GDWNGAGAHT NYSTKSMREA GGYEVIKKAI EKLGKRHTEH IAAYGEGNER RLTGRHETAD
301: INTFKWGVAN RGASIRVGRD TEREGKGYFE DRRPASNMDP YVVTGMIAET TILWNGN

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.