Factsheet for GSMUA_Achr3P07420_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	92.42	92.42
GSMUA_AchrUn_...	Banana	cytosol	3.09	91.67
GSMUA_AchrUn_...	Banana	cytosol	90.73	90.73
VIT_14s0006g00350.t01	Wine grape	cytosol	89.61	89.61
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	89.04	89.04
OQU92979	Sorghum	cytosol	89.04	88.8
KRH30929	Soybean	endoplasmic reticulum	88.48	88.48
KRH17323	Soybean	cytosol	88.48	88.48
GSMUA_Achr8P30880_001	Banana	cytosol	88.2	87.96
KRH72976	Soybean	cytosol	87.92	87.92
GSMUA_Achr1P22290_001	Banana	cytosol	87.64	87.39
GSMUA_Achr1P15140_001	Banana	cytosol	86.52	86.52
Os03t0223400-01	Rice	cytosol, plasma membrane	85.96	85.71
TraesCS4A01G063800.1	Wheat	cytosol	83.99	84.46
TraesCS4B01G240900.1	Wheat	cytosol, golgi	83.71	84.18
TraesCS4D01G240700.1	Wheat	cytosol	83.71	84.18
HORVU4Hr1G066860.5	Barley	plasma membrane	84.27	78.33
GSMUA_Achr9P17480_001	Banana	cytosol	77.25	77.25
KRH72975	Soybean	cytosol	54.78	77.08
Zm00001d048050_P004	Maize	cytosol	74.16	76.52
Zm00001d028260_P005	Maize	cytosol	83.71	76.21
GSMUA_Achr3P14170_001	Banana	cytosol	14.89	68.83
GSMUA_Achr3P09120_001	Banana	mitochondrion	77.81	68.56
KRH17322	Soybean	cytosol	46.07	65.08
GSMUA_Achr3P14160_001	Banana	plastid	17.98	44.76

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	EnsemblPlantsGene:GSMUA_Achr3G07420_001	EnsemblPlants:GSMUA_Achr3P07420_001	EnsemblPlants:GSMUA_Achr3T07420_001	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
UniProt:M0SCK9	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000296F6F2	:

Description

Glutamine synthetase nodule isozyme [Source:GMGC_GENE;Acc:GSMUA_Achr3G07420_001]

Coordinates

chr3:+:5122089..5125523

Molecular Weight (calculated)

39243.4 Da

IEP (calculated)

5.711

GRAVY (calculated)

-0.391

Length

356 amino acids

Sequence
(BLAST)

001: MSLLTDLVNL NLSNTTDNII AEYIWIGGSG MDMRSKARTL TGPVTDPSKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDCYTPAGE
101: PIPTNKRFNA AKIFSHPAVT AEVPWYGIEQ EYTLLQKDVK WPLGWPVGGF PGPQGPYYCA AGADKAFGRD IVDAHYKACL YAGVNISGIN GEVMPGQWEF
201: QVGPAVGISA GDELWIARYI LERITEIAGV VLSFDPKPIQ GDWNGAGAHT NYSTQSMRSD GGYEVIKKAI EKLGKRHKEH IAAYGEGNER RLTGRHETAD
301: INTFLWGVAN RGASIRVGRE TERNGKGYFE DRRPASNMDP YIVTSMIAET TILWEP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.