Factsheet for HORVU4Hr1G066860.5

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	mitochondrion

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G240900.1	Wheat	cytosol, golgi	90.08	97.46
TraesCS4D01G240700.1	Wheat	cytosol	89.82	97.18
TraesCS4A01G063800.1	Wheat	cytosol	89.82	97.18
OQU92979	Sorghum	cytosol	82.51	88.52
Os03t0223400-01	Rice	cytosol, plasma membrane	82.51	88.52
GSMUA_Achr3P20250_001	Banana	cytosol, plasma membrane	78.85	84.83
GSMUA_AchrUn_...	Banana	cytosol	78.33	84.27
GSMUA_Achr3P07420_001	Banana	cytosol, plasma membrane	78.33	84.27
VIT_14s0006g00350.t01	Wine grape	cytosol	78.33	84.27
KRH17323	Soybean	cytosol	78.07	83.99
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	77.02	82.87
KRH72976	Soybean	cytosol	77.02	82.87
KRH30929	Soybean	endoplasmic reticulum	75.98	81.74
HORVU4Hr1G007610.1	Barley	cytosol	73.63	77.9
Zm00001d048050_P004	Maize	cytosol	68.67	76.23
Zm00001d028260_P005	Maize	cytosol	76.76	75.19
KRH72975	Soybean	cytosol	49.09	74.31
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	76.5	72.17
KRH17322	Soybean	cytosol	42.56	64.68

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	UniProt:A0A287PFH8	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	EnsemblPlantsGene:HORVU4Hr1G066860	EnsemblPlants:HORVU4Hr1G066860.5	InterPro:IPR036651
PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF78
SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000B48161D	SEG:seg	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A287PFH8]

Coordinates

chrchr4H:+:555802026..555805554

Molecular Weight (calculated)

41666.2 Da

IEP (calculated)

6.848

GRAVY (calculated)

-0.352

Length

383 amino acids

Sequence
(BLAST)

001: PASRAAHLIS SSSSPHCHRP PSLRAAAAAM ASLADLVNLN LSDCTDKVIV EYLWVGGSGI DIRSKARTVN GPITDASQLP KWNYDGSSTG QAPGEDSEVI
101: LYPQAIFKDP FRRGDNILVM CDCYTPQGVP IPTNKRHNAA KIFNSAKVAA EETWYGIEQE YTLLQKDVNW PLGWPIGGYP GPQGPYYCAA GADKAFGRDI
201: VDAHYKACLY AGINISGING EVMPGQWEFQ VGPSVGIAAS DQLWVARYIL ERITEVAGVV LSLDPKPIPG DWNGAGAHTN YSTKSMRQAG GYEVIKKAIE
301: KLGKRHMQHI AAYGEGNERR LTGHHETADI NTFKWGVADR GASIRVGRDT EKDGKGYFED RRPASNMDPY VVTSMIAETT LLL

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.