Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 21107622
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 21107622 doi
N Ahsan, T Nakamura, S Komatsu
National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97948 Soybean cytosol, endoplasmic reticulum, nucleus 96.35 96.35
VIT_14s0006g00350.t01 Wine grape cytosol 90.45 90.45
KRH48674 Soybean endoplasmic reticulum 89.89 89.89
KRH72976 Soybean cytosol 89.61 89.61
GSMUA_Achr3P20250_001 Banana cytosol, plasma membrane 89.33 89.33
KRH17323 Soybean cytosol 89.33 89.33
KRH39031 Soybean cytosol, nucleus 89.33 89.33
GSMUA_AchrUn_... Banana cytosol 89.04 89.04
GSMUA_Achr3P07420_001 Banana cytosol, plasma membrane 88.48 88.48
OQU92979 Sorghum cytosol 86.52 86.27
GSMUA_Achr8P30880_001 Banana cytosol 85.67 85.43
Os03t0223400-01 Rice cytosol, plasma membrane 85.67 85.43
GSMUA_Achr1P22290_001 Banana cytosol 85.67 85.43
TraesCS4B01G240900.1 Wheat cytosol, golgi 81.74 82.2
TraesCS4D01G047400.1 Wheat cytosol 83.43 82.04
TraesCS4A01G063800.1 Wheat cytosol 81.46 81.92
HORVU4Hr1G007610.1 Barley cytosol 83.15 81.77
OQU91109 Sorghum cytosol 84.27 81.74
TraesCS4D01G240700.1 Wheat cytosol 81.18 81.64
Zm00001d033747_P001 Maize cytosol, extracellular 84.55 81.57
TraesCS4A01G266900.1 Wheat cytosol 82.58 81.22
TraesCS4B01G047400.1 Wheat cytosol, golgi 82.58 81.22
KRH12677 Soybean extracellular 27.81 79.84
Os03t0712800-02 Rice cytosol, plastid 82.58 79.46
KRH72975 Soybean cytosol 55.9 78.66
Zm00001d048050_P004 Maize cytosol 73.88 76.23
HORVU4Hr1G066860.5 Barley plasma membrane 81.74 75.98
Zm00001d028260_P005 Maize cytosol 83.15 75.7
KRH17322 Soybean cytosol 48.31 68.25
KRH20936 Soybean plastid 79.49 65.51
KRH11349 Soybean plastid 79.49 65.51
KRH71070 Soybean extracellular 17.42 64.58
KRH25519 Soybean plastid 20.22 37.89
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40EntrezGene:548082EMBL:ACUP02007101EMBL:AF301590EMBL:BT097849EnsemblPlantsGene:GLYMA_11G215500
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006542GO:GO:0006807
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009399GO:GO:0009987GO:GO:0016874
InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_site
InterPro:IPR036651EnsemblPlants:KRH30929ProteinID:KRH30929ProteinID:KRH30929.1PFAM:PF00120PFAM:PF03951
ScanProsite:PS00180ScanProsite:PS00181MetaCyc:PWY-381MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963
MetaCyc:PWY-6964UniProt:Q9FUK4SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI00000A4C28
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr11:-:30885378..30889724
Molecular Weight (calculated)
38993.0 Da
IEP (calculated)
5.452
GRAVY (calculated)
-0.374
Length
356 amino acids
Sequence
(BLAST)
001: MSLLSDLINL NLSDTTEKVI AEYIWIGGSG MDLRSKARTL PGPVSDPSEL PKWNYDGSST GQAPGEDSEV ILYPQAIFRD PFRRGNNILV ICDAYTPAGE
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDIQ WPLGWPVGGF PGPQGPYYCG VGADKAFGRD IVDAHYKACI YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDEIWAARYI LERITEIAGV VVSFDPKPIK GDWNGAGAHT NYSTKSMRED GGYEVIKAAI DKLGKKHKEH IAAYGEGNER RLTGRHETAD
301: INTFLWGVAN RGASVRVGRD TEKAGKGYFE DRRPASNMDP YVVTSMIADT TILWKP
Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.