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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • vacuole 2
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH06401
KRH47835

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G37600.1 KRH06401 AT2G46700.1 16472779
AT5G37600.1 KRH47835 AT2G46700.1 16472779
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH39031 Soybean cytosol, nucleus 98.31 98.31
KRG97948 Soybean cytosol, endoplasmic reticulum, nucleus 90.17 90.17
KRH30929 Soybean endoplasmic reticulum 89.89 89.89
Solyc04g014510.2.1 Tomato cytosol, extracellular, plastid, unclear 89.33 89.33
CDX74573 Canola cytosol 89.33 89.33
KXG30808 Sorghum cytosol 89.04 89.04
PGSC0003DMT400060733 Potato cytosol 89.04 89.04
VIT_01s0011g02200.t01 Wine grape cytosol 89.04 89.04
Zm00001d051804_P001 Maize cytosol, extracellular, mitochondrion, plasma membrane 88.76 88.76
AT5G37600.1 Thale cress cytosol 88.48 88.48
Bra028132.1-P Field mustard cytosol 88.48 88.48
KRH17323 Soybean cytosol 88.48 88.48
CDY01727 Canola cytosol 86.52 88.25
CDY16439 Canola cytosol 88.2 88.2
CDY52941 Canola cytosol 88.2 88.2
KRH72976 Soybean cytosol 87.92 87.92
Bra039756.1-P Field mustard cytosol 87.92 87.92
Os02t0735200-02 Rice cytosol 87.64 87.64
CDX85499 Canola cytosol 86.52 86.52
Bra023573.1-P Field mustard cytosol 86.52 86.52
CDY38104 Canola cytosol 86.24 86.24
AT1G66200.3 Thale cress cytosol 88.2 86.03
CDY49656 Canola cytosol 85.96 85.96
TraesCS6A01G298100.2 Wheat cytosol 85.96 85.96
Bra008612.1-P Field mustard cytosol 85.96 85.96
TraesCS6B01G327500.1 Wheat cytosol, golgi, plastid, unclear 85.67 85.67
CDX69442 Canola cytosol 85.67 85.67
AT5G16570.1 Thale cress cytosol 85.11 85.11
Zm00001d017958_P002 Maize cytosol 87.36 84.51
KRH12677 Soybean extracellular 26.69 76.61
KRH72975 Soybean cytosol 54.21 76.28
HORVU6Hr1G074030.2 Barley cytosol, mitochondrion, plastid 86.8 76.11
KRH17322 Soybean cytosol 46.07 65.08
KRH20936 Soybean plastid 78.93 65.05
KRH11349 Soybean plastid 78.93 65.05
KRH71070 Soybean extracellular 16.85 62.5
KRH25519 Soybean plastid 20.51 38.42
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2EntrezGene:100817922MapMan:25.1.5.1.1
Gene3D:3.10.20.70Gene3D:3.30.590.40UniProt:A0A0R4J3P1EMBL:ACUP02004260EnsemblPlantsGene:GLYMA_07G104500GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005524GO:GO:0006542
GO:GO:0006807GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016874
InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_site
InterPro:IPR036651EnsemblPlants:KRH48674ProteinID:KRH48674ProteinID:KRH48674.1PFAM:PF00120PFAM:PF03951
ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF66MetaCyc:PWY-381MetaCyc:PWY-5675
MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931
UniParc:UPI00019D33FBSEG:seg::::
Description
hypothetical protein
Coordinates
chr7:-:10087163..10092408
Molecular Weight (calculated)
39150.1 Da
IEP (calculated)
5.141
GRAVY (calculated)
-0.442
Length
356 amino acids
Sequence
(BLAST)
001: MSLLSDLINL NLSESTEKII AEYIWVGGSG MDLRSKARTL PGPVSDPAKL PKWNYDGSST DQAPGDDSEV ILYPQAIFKD PFRRGNNILV ICDVYTPAGE
101: PLPTNKRYGA AKIFSHPDVA AEEPWYGIEQ EYTLLQKDVN WPLGWPLGGF PGPQGPYYCG IGADKAYGRD IVDAHYKACI YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDEVWAARYI LERITEIAGA IVSFDPKPIP GDWNGAGAHS NYSTKSMREE GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGRHETAD
301: INTFSWGVAN RGSSIRVGRD TEKNGKGYFE DRRPASNMDP YVVTSMIAET TILWKP
Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.