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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • plastid 2
  • cytosol 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra039263.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G37600.1 Bra039263.1-P AT2G46700.1 16472779
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74573 Canola cytosol 98.6 98.6
AT5G37600.1 Thale cress cytosol 93.54 93.54
Bra039756.1-P Field mustard cytosol 92.7 92.7
Solyc11g011380.1.1 Tomato extracellular 89.04 89.55
PGSC0003DMT400034421 Potato cytosol 88.76 89.27
KRH48674 Soybean endoplasmic reticulum 88.48 88.48
KRH39031 Soybean cytosol, nucleus 87.92 87.92
VIT_01s0011g02200.t01 Wine grape cytosol 87.64 87.64
Bra023573.1-P Field mustard cytosol 87.36 87.36
PGSC0003DMT400037822 Potato cytosol 86.8 86.8
Solyc05g051250.2.1 Tomato unclear 86.52 86.52
Bra008612.1-P Field mustard cytosol 86.24 86.24
Bra022247.1-P Field mustard cytosol 84.27 84.75
Bra021276.1-P Field mustard cytosol 83.15 83.62
Bra018729.1-P Field mustard cytosol 79.78 80.68
Bra001686.1-P Field mustard endoplasmic reticulum, golgi 77.53 77.97
Bra035392.1-P Field mustard plastid 77.53 64.49
Bra035529.1-P Field mustard plastid 76.69 63.78
Bra032257.1-P Field mustard cytosol 29.21 61.18
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40EnsemblPlantsGene:Bra028132EnsemblPlants:Bra028132.1EnsemblPlants:Bra028132.1-PGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005507GO:GO:0005524GO:GO:0005575
GO:GO:0005576GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773
GO:GO:0005829GO:GO:0005840GO:GO:0005886GO:GO:0006542GO:GO:0006807GO:GO:0006950
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009536
GO:GO:0009570GO:GO:0009628GO:GO:0009651GO:GO:0009941GO:GO:0009987GO:GO:0010150
GO:GO:0016020GO:GO:0016874GO:GO:0022626GO:GO:0030312GO:GO:0048046InterPro:Gln_synt_N
InterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651
UniProt:M4EH67PFAM:PF00120PFAM:PF03951ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852
PANTHER:PTHR20852:SF58SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI00025443C3SEG:seg
Description
AT5G37600 (E=1e-192) ATGSR1, GLN1;1, GSR 1 | ATGSR1; copper ion binding / glutamate-ammonia ligase
Coordinates
chrA04:-:5995722..5998116
Molecular Weight (calculated)
39050.1 Da
IEP (calculated)
5.006
GRAVY (calculated)
-0.348
Length
356 amino acids
Sequence
(BLAST)
001: MSLLTDLVNL NLSETTDKVI AEYIWVGGSG MDMRSKARTL PGPVSDPSEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDVN WPLGWPLGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA GDEILVARFI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMRED GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIADT TILWNP
Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.