Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37600.1 | CDY27530 | AT2G46700.1 | 16472779 |
| AT5G37600.1 | CDY48019 | AT2G46700.1 | 16472779 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028132.1-P | Field mustard | cytosol | 98.6 | 98.6 |
| CDY01727 | Canola | cytosol | 96.63 | 98.57 |
| AT5G37600.1 | Thale cress | cytosol | 94.38 | 94.38 |
| CDY16439 | Canola | cytosol | 93.82 | 93.82 |
| CDY52941 | Canola | cytosol | 93.26 | 93.26 |
| Solyc11g011380.1.1 | Tomato | extracellular | 90.17 | 90.68 |
| PGSC0003DMT400034421 | Potato | cytosol | 89.89 | 90.4 |
| KRH48674 | Soybean | endoplasmic reticulum | 89.33 | 89.33 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 88.76 | 88.76 |
| KRH39031 | Soybean | cytosol, nucleus | 88.76 | 88.76 |
| PGSC0003DMT400037822 | Potato | cytosol | 88.2 | 88.2 |
| CDY38104 | Canola | cytosol | 88.2 | 88.2 |
| CDX85499 | Canola | cytosol | 88.2 | 88.2 |
| Solyc05g051250.2.1 | Tomato | unclear | 87.92 | 87.92 |
| CDY49656 | Canola | cytosol | 87.92 | 87.92 |
| CDX69442 | Canola | cytosol | 87.64 | 87.64 |
| CDX92165 | Canola | cytosol | 85.39 | 85.88 |
| CDX95818 | Canola | cytosol | 85.39 | 85.88 |
| CDY68590 | Canola | cytosol | 84.27 | 84.75 |
| CDY68179 | Canola | cytosol | 84.27 | 84.75 |
| CDX75942 | Canola | cytosol | 80.9 | 81.13 |
| CDX82343 | Canola | cytosol | 80.62 | 80.85 |
| CDY49672 | Canola | cytosol | 80.34 | 80.11 |
| CDX93671 | Canola | cytosol | 80.34 | 80.11 |
| CDY49365 | Canola | plastid | 73.6 | 66.5 |
| CDX74644 | Canola | plastid | 78.37 | 65.19 |
| CDX84116 | Canola | plastid | 43.54 | 62.75 |
| CDY33684 | Canola | plastid | 78.37 | 57.06 |
| CDY27610 | Canola | cytosol | 32.3 | 55.02 |
| CDY27650 | Canola | mitochondrion | 25.0 | 52.66 |
| CDX98429 | Canola | plastid | 21.35 | 36.19 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | EnsemblPlants:CDX74573 | ProteinID:CDX74573 | ProteinID:CDX74573.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006542 | GO:GO:0006807 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016874 | EnsemblPlantsGene:GSBRNA2T00114519001 |
| InterPro:Gln_synt_N | InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site | InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site |
| InterPro:IPR036651 | PFAM:PF00120 | PFAM:PF03951 | ScanProsite:PS00180 | ScanProsite:PS00181 | PANTHER:PTHR20852 |
| PANTHER:PTHR20852:SF58 | MetaCyc:PWY-381 | MetaCyc:PWY-5675 | MetaCyc:PWY-6549 | MetaCyc:PWY-6963 | MetaCyc:PWY-6964 |
| GO:Q42623 | UniProt:Q42623 | SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 | UniParc:UPI000009D449 |
Description
BnaA04g08160DGlutamine synthetase [Source:UniProtKB/TrEMBL;Acc:Q42623]
Coordinates
chrLK031801:+:1607859..1610693
Molecular Weight (calculated)
39165.3 Da
IEP (calculated)
5.126
GRAVY (calculated)
-0.360
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLTDLVNL NLSETTDKII AEYIWVGGSG MDMRSKARTL PGPVSDPSEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA GDEIWVARFI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMRED GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWKP
101: PIPTNKRHAA AKVFSHPDVV AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA GDEIWVARFI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMRED GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWKP
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
Arabidopsis Description
GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.