Factsheet for PGSC0003DMT400034421

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011380.1.1	Tomato	extracellular	98.59	98.59
CDX74573	Canola	cytosol	90.4	89.89
AT5G37600.1	Thale cress	cytosol	89.55	89.04
PGSC0003DMT400037822	Potato	cytosol	89.55	89.04
Bra028132.1-P	Field mustard	cytosol	89.27	88.76
CDY01727	Canola	cytosol	87.29	88.54
CDY52941	Canola	cytosol	88.7	88.2
Bra039756.1-P	Field mustard	cytosol	88.7	88.2
CDY16439	Canola	cytosol	88.7	88.2
VIT_01s0011g02200.t01	Wine grape	cytosol	88.42	87.92
CDY38104	Canola	cytosol	88.42	87.92
CDX85499	Canola	cytosol	88.14	87.64
Bra023573.1-P	Field mustard	cytosol	88.14	87.64
CDX69442	Canola	cytosol	87.85	87.36
CDY49656	Canola	cytosol	87.85	87.36
Bra008612.1-P	Field mustard	cytosol	87.57	87.08
AT5G16570.1	Thale cress	cytosol	87.29	86.8
PGSC0003DMT400060733	Potato	cytosol	87.01	86.52
AT1G66200.3	Thale cress	cytosol	88.14	85.48
PGSC0003DMT400037457	Potato	cytosol, plastid	71.47	79.31
PGSC0003DMT400011133	Potato	cytosol	76.27	62.5
PGSC0003DMT400036605	Potato	cytosol	14.12	56.82
PGSC0003DMT400045640	Potato	cytosol, plastid	15.82	26.67

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	ProteinID:AAG40237	ProteinID:AAG40237.2	EMBL:AF302114	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
UniProt:M1B0M9	PFAM:PF00120	PFAM:PF03951	EnsemblPlantsGene:PGSC0003DMG400013235	PGSC:PGSC0003DMG400013235	EnsemblPlants:PGSC0003DMT400034421
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368
SUPFAM:SSF55931	UniParc:UPI000294D6C7	SEG:seg	:	:	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400013235]

Coordinates

chr11:-:1281008..1285522

Molecular Weight (calculated)

38672.8 Da

IEP (calculated)

5.682

GRAVY (calculated)

-0.373

Length

354 amino acids

Sequence
(BLAST)

001: MSLLSDLINL NLSDDTQKII AEYIWIGGSG MDMRSKARTL PGPVTTPAEL PKWNYDGSST GQAPGEDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSHPDVA AEETWYGIEQ EYTLLQKEVN WPLGWPIGGF PGPQGPYYCG TGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA GDEVWVARYI LERIAEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMRED GGYKIILKAI EKLGLKHKEH IAAYGEGNER RLTGKHETAN
301: INTFKWGVAN RGASVRVGRD TEKAGKGYFE DRRPASNMDP YVVTSMIAET TIIG

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.