Factsheet for PGSC0003DMT400060733

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014510.2.1	Tomato	cytosol, extracellular, plastid, unclear	98.88	98.88
KRH48674	Soybean	endoplasmic reticulum	89.04	89.04
KRH39031	Soybean	cytosol, nucleus	88.48	88.48
VIT_01s0011g02200.t01	Wine grape	cytosol	88.48	88.48
PGSC0003DMT400034421	Potato	cytosol	86.52	87.01
PGSC0003DMT400037822	Potato	cytosol	86.24	86.24
PGSC0003DMT400037457	Potato	cytosol, plastid	70.79	79.0
PGSC0003DMT400011133	Potato	cytosol	78.65	64.81
PGSC0003DMT400036605	Potato	cytosol	14.61	59.09
PGSC0003DMT400045640	Potato	cytosol, plastid	16.01	27.14

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:102595103	MapMan:25.1.5.1.1
Gene3D:3.10.20.70	Gene3D:3.30.590.40	ProteinID:AAG40238	ProteinID:AAG40238.2	EMBL:AF302115	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site
InterPro:IPR036651	UniProt:M1C6B8	PFAM:PF00120	PFAM:PF03951	EnsemblPlantsGene:PGSC0003DMG400023620	PGSC:PGSC0003DMG400023620
EnsemblPlants:PGSC0003DMT400060733	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF66	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000294DA99	RefSeq:XP_006346760.1	SEG:seg	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400023620]

Coordinates

chr4:+:8409954..8414227

Molecular Weight (calculated)

39211.2 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.445

Length

356 amino acids

Sequence
(BLAST)

001: MAHLSDLVNL NLSDSSEKII AEYIWIGGSG MDVRSKARTL SGPVDDPSKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV ICDCYTPAGE
101: PIPTNKRHNA AKIFSNPDVV VEEPWYGLEQ EYTLLQKEIN WPLGWPIGGF PGPQGPYYCG IGSGKAFGRD IVDAHYKACI YAGINISGIN GEVMPGQWEF
201: QVGPSVGIAS GDELWAARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMRNE GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGRHETAD
301: INTFKWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TLLWNP

Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)

001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP

Arabidopsis Description

ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.