Factsheet for PGSC0003DMT400037457

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g041870.1.1	Tomato	cytosol	93.73	83.29
VIT_01s0011g02200.t01	Wine grape	cytosol	81.82	73.31
PGSC0003DMT400034421	Potato	cytosol	79.31	71.47
Os02t0735200-02	Rice	cytosol	79.62	71.35
PGSC0003DMT400060733	Potato	cytosol	79.0	70.79
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	79.0	70.79
PGSC0003DMT400037822	Potato	cytosol	78.68	70.51
KXG30808	Sorghum	cytosol	78.37	70.22
TraesCS6A01G298100.2	Wheat	cytosol	77.43	69.38
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	77.43	69.38
Zm00001d017958_P002	Maize	cytosol	78.37	67.93
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	78.37	61.58
PGSC0003DMT400036605	Potato	cytosol	15.36	55.68
PGSC0003DMT400011133	Potato	cytosol	73.04	53.94
PGSC0003DMT400045640	Potato	cytosol, plastid	15.05	22.86

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.30.590.40
MapMan:50.6.3	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488
GO:GO:0005524	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	UniProt:M1B5F0	PFAM:PF00120	PFAM:PF03951
EnsemblPlantsGene:PGSC0003DMG400014454	PGSC:PGSC0003DMG400014454	EnsemblPlants:PGSC0003DMT400037457	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852
PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000294B1E9	:

Description

Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400014454]

Coordinates

chr12:-:48628453..48630921

Molecular Weight (calculated)

35061.5 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.409

Length

319 amino acids

Sequence
(BLAST)

001: QTLHGPVTNP SQIPKWNYDG SSTGQAPGED SEVILYPQAI YKDPFRGGNH ILVMCDAYTP AGEPIPTNKR FNAVKIFNHP EVLTEEPWFG IEQEYTLLQK
101: NLNWPLGWPI GGYRGPQGPY YCGVGAEKAF GRDIVDLHYK ACLYAGVNIG GINAEVMAGQ WEFQVGPTVG ISPCDDLWVA RYILVRIAEA VGVIVSFDPK
201: PVEGDCNGAG AHTNYSTKSM RADGGLEVIN KAIEKLGKRH KEHIAAYGVG NERRLTGEHE TADINTFNFG TADRGASIRI GRDTQKAGKG YLEDRRPSSN
301: MDPYMVTSMI AETTIIWKP

Best Arabidopsis Sequence Match ( AT5G16570.1 )
(BLAST)

001: MSSLADLINL DLSDSTDQII AEYIWIGGSG LDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGDDSEV IIYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKIFEDPSVV AEETWYGIEQ EYTLLQKDIK WPVGWPVGGF PGPQGPYYCG VGADKAFGRD IVDSHYKACL YAGINVSGTN GEVMPGQWEF
201: QVGPTVGIAA ADQVWVARYI LERITELAGV VLSLDPKPIP GDWNGAGAHT NYSTKSMRED GGYEVIKKAI EKLGLRHKEH IAAYGEGNER RLTGKHETAD
301: INTFLWGVAN RGASIRVGRD TEQAGKGYFE DRRPASNMDP YTVTSMIAES TILWKP

Arabidopsis Description

GLN1-4Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178UB24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.