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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 8
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g080280.2.1 Tomato plastid 98.15 98.15
GSMUA_Achr9P17480_001 Banana cytosol 72.22 87.64
Bra035392.1-P Field mustard plastid 85.19 85.98
CDX74644 Canola plastid 85.19 85.98
Bra035529.1-P Field mustard plastid 84.72 85.51
VIT_07s0104g00610.t01 Wine grape plastid 85.65 85.45
AT5G35630.1 Thale cress plastid 84.95 85.35
CDY49365 Canola plastid 77.31 84.77
VIT_05s0020g02480.t01 Wine grape plastid 84.49 84.49
GSMUA_Achr3P09120_001 Banana mitochondrion 77.78 83.17
Os04t0659100-01 Rice plastid 80.56 81.31
TraesCS2B01G528300.1 Wheat plastid 78.01 79.67
TraesCS2A01G500400.1 Wheat plastid 78.47 79.39
TraesCS2D01G500600.1 Wheat plastid 78.47 79.39
CDX84116 Canola plastid 45.37 79.35
PGSC0003DMT400060733 Potato cytosol 64.81 78.65
KXG27313 Sorghum plastid 78.47 78.29
PGSC0003DMT400037822 Potato cytosol 63.66 77.25
PGSC0003DMT400034421 Potato cytosol 62.5 76.27
CDY33684 Canola plastid 85.19 75.26
PGSC0003DMT400037457 Potato cytosol, plastid 53.94 73.04
PGSC0003DMT400036605 Potato cytosol 13.66 67.05
PGSC0003DMT400045640 Potato cytosol, plastid 15.51 31.9
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.2Gene3D:3.10.20.70
Gene3D:3.30.590.40ProteinID:AAG40236ProteinID:AAG40236.2EMBL:AF302113GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840
GO:GO:0006542GO:GO:0006807GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628
GO:GO:0009651GO:GO:0009719GO:GO:0009735GO:GO:0009941GO:GO:0009987GO:GO:0016020
GO:GO:0016874GO:GO:0022626GO:GO:0046686GO:GO:0048046InterPro:Gln_synt_NInterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_siteInterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651UniProt:M0ZZ31
PFAM:PF00120PFAM:PF03951EnsemblPlantsGene:PGSC0003DMG400004355PGSC:PGSC0003DMG400004355EnsemblPlants:PGSC0003DMT400011133ScanProsite:PS00180
ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF53SMART:SM01230SUPFAM:SSF54368SUPFAM:SSF55931
UniParc:UPI0002963586SEG:seg::::
Description
Glutamine synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400004355]
Coordinates
chr1:-:61147270..61152558
Molecular Weight (calculated)
47592.4 Da
IEP (calculated)
6.631
GRAVY (calculated)
-0.402
Length
432 amino acids
Sequence
(BLAST)
001: MAQILAPSAQ WQMRMTKSST DASPLTSKMW SSVVLKQNKR LAVKSSAKFR VFALQSDNGT VNRMEQLLNL DVTPYTDKII AEYIWIGGTG IDVRSKSRTI
101: SKPVKDASEL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRGGNNILV ICDTYTPAGE PIPTNKRHKA AQIFSDPKVA SQVPWFGIEQ EYTLLQPNVN
201: WPLGWPVGGY PGPQGPYYCG AGVEKSFGRD ISDAHYKACL YAGINISGTN GEVMPGQWEF QVGPSVGIEG GDHIWCARYL LERITEQAGV VLSLDPKPIE
301: GDWNGAGCHT NYSTLSMREE GGFEVIKKAI LNLSLRHKEH ISAYGEGNER RLTGKHETAS IDQFSWGVAN RGCSIRVGRD TEKEGKGYLE DRRPASNMDP
401: YVVTALLAET TILWEPTLEA EALAAQKISL KV
Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)
001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV
Arabidopsis Description
GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.