Factsheet for VIT_07s0104g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P17480_001	Banana	cytosol	75.29	91.57
KRH20936	Soybean	plastid	88.22	88.43
KRH11349	Soybean	plastid	87.99	88.19
GSMUA_Achr3P09120_001	Banana	mitochondrion	81.76	87.62
VIT_05s0020g02480.t01	Wine grape	plastid	87.07	87.27
Solyc01g080280.2.1	Tomato	plastid	85.68	85.88
PGSC0003DMT400011133	Potato	cytosol	85.45	85.65
Bra035392.1-P	Field mustard	plastid	83.14	84.11
CDX74644	Canola	plastid	83.14	84.11
AT5G35630.1	Thale cress	plastid	83.14	83.72
Bra035529.1-P	Field mustard	plastid	81.99	82.94
CDY49365	Canola	plastid	74.6	81.98
Os04t0659100-01	Rice	plastid	80.37	81.31
VIT_14s0006g00350.t01	Wine grape	cytosol	66.51	80.9
TraesCS2A01G500400.1	Wheat	plastid	79.21	80.33
TraesCS2D01G500600.1	Wheat	plastid	79.21	80.33
TraesCS2B01G528300.1	Wheat	plastid	78.29	80.14
KXG27313	Sorghum	plastid	79.91	79.91
VIT_01s0011g02200.t01	Wine grape	cytosol	65.59	79.78
CDX84116	Canola	plastid	43.19	75.71
CDY33684	Canola	plastid	83.14	73.62
VIT_17s0000g01910.t01	Wine grape	cytosol	62.82	71.77
VIT_10s0042g01000.t01	Wine grape	cytosol	6.93	55.56
PGSC0003DMT400045640	Potato	cytosol, plastid	14.78	30.48

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:100242605	wikigene:100242605
MapMan:25.1.5.1.2	Gene3D:3.10.20.70	Gene3D:3.30.590.40	EMBL:AM472308	ProteinID:CAN61808	ProteinID:CAN61808.1
ProteinID:CBI32325	ProteinID:CBI32325.3	UniProt:D7TPA2	EMBL:FN596005	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651
EntrezGene:LOC100242605	wikigene:LOC100242605	PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181
PANTHER:PTHR20852	PANTHER:PTHR20852:SF53	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI00015CB098
ArrayExpress:VIT_07s0104g00610	EnsemblPlantsGene:VIT_07s0104g00610	EnsemblPlants:VIT_07s0104g00610.t01	unigene:Vvi.4066	RefSeq:XP_002274139	RefSeq:XP_002274139.1
SEG:seg	:	:	:	:	:

Description

Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:D7TPA2]

Coordinates

chr7:+:1814538..1817726

Molecular Weight (calculated)

47682.4 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.407

Length

433 amino acids

Sequence
(BLAST)

001: MAHITAPSVQ CQVRVVPTSS FTARPMTAKL WNSLLLNQRK KGTSRSSARF RVLALQSESS TVNRLKDLLN LDITPYTDKI IAEYIWIGGS GIDLRSKSRT
101: ISKPVKHPSE LPKWNYDGSS TGQAPGEDSE VILYPQAIFK DPFRGGNNIL VICDSYTPAG EPIPTNKRHG AAEIFSSQKV INEVPWYGIE QEYTLLQTNV
201: KWPLGWPVGG YPGPQGPYYC GAGADKSFGR DISDAHYKAC LYAGINISGT NGEVMPGQWE YQVGPSVGIE AGDHIWCSRY ILERITEQAG VVLSLDPKPI
301: EGDWNGAGCH TNYSTKSMRE DGGFEVIKKA ILNLSLRHEV HISAYGEGNE RRLTGKHETA SIDTFSWGVA NRGCSIRVGR DTEKNGKGYL EDRRPASNMD
401: PYVVTSLLAE TTILWEPTLE AEALAAQKLS LKV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.