CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20936	Soybean	plastid	99.07	99.07
GSMUA_Achr9P17480_001	Banana	cytosol	75.69	91.85
VIT_07s0104g00610.t01	Wine grape	plastid	88.19	87.99
GSMUA_Achr3P09120_001	Banana	mitochondrion	81.02	86.63
KRH30929	Soybean	endoplasmic reticulum	65.51	79.49
KRH48674	Soybean	endoplasmic reticulum	65.05	78.93
KRH39031	Soybean	cytosol, nucleus	64.81	78.65
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	64.58	78.37
KRH17323	Soybean	cytosol	63.89	77.53
KRH72976	Soybean	cytosol	63.89	77.53
KRH71070	Soybean	extracellular	16.67	75.0
KRH12677	Soybean	extracellular	20.37	70.97
KRH72975	Soybean	cytosol	39.81	67.98
KRH25519	Soybean	plastid	27.78	63.16
KRH17322	Soybean	cytosol	33.8	57.94

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:100780873	MapMan:25.1.5.1.2
Gene3D:3.10.20.70	Gene3D:3.30.590.40	EMBL:ACUP02009203	EnsemblPlantsGene:GLYMA_15G102000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N
InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	UniProt:I1MFC4
InterPro:IPR036651	EnsemblPlants:KRH11349	ProteinID:KRH11349	ProteinID:KRH11349.1	ProteinID:KRH11350.1	ProteinID:KRH11351.1
PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF53
MetaCyc:PWY-381	MetaCyc:PWY-5675	MetaCyc:PWY-6549	MetaCyc:PWY-6963	MetaCyc:PWY-6964	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0001D83CCA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:7965801..7971765

Molecular Weight (calculated)

47694.4 Da

IEP (calculated)

7.218

GRAVY (calculated)

-0.458

Length

432 amino acids

Sequence
(BLAST)

001: MAQILAPSTQ WQMRISKSSP NASPITSNMW SSLLWKQNKK VSPTSSAKFR VMAIKSDNSI INRLEGLLNL DITPFTDKII AEYIWIGGTG IDVRSKSRTI
101: SKPVEHPSEL PKWNYDGSST GQAPGDDSEV ILYPQAIFKD PFRGGNNILV ICDSYTPQGE PIPTNKRHRA AEIFSNPKVQ AEVPWYGIEQ EYTLLQTNVK
201: WPLGWPVGGY PGPQGPYYCS AGADKSFGRD ISDAHYKACL YAGINISGTN GEVMPGQWEY QVGPSVGIEA GDHIWASRYI LERITEQAGV VLSLDPKPIE
301: GDWNGAGCHT NYSTKSMRED GGFEVIKKAI LNLSLRHKDH ISAYGEGNER RLTGKHETAS INTFSWGVAN RGCSIRVGRD TEKNGKGYLE DRRPASNMDP
401: YVVTSLLAET TLLWEPTLEA EALAAQKLAL KV

Best Arabidopsis Sequence Match ( AT5G35630.3 )
(BLAST)

001: MAQILAASPT CQMRVPKHSS VIASSSKLWS SVVLKQKKQS NNKVRGFRVL ALQSDNSTVN RVETLLNLDT KPYSDRIIAE YIWIGGSGID LRSKSRTIEK
101: PVEDPSELPK WNYDGSSTGQ APGEDSEVIL YPQAIFRDPF RGGNNILVIC DTWTPAGEPI PTNKRAKAAE IFSNKKVSGE VPWFGIEQEY TLLQQNVKWP
201: LGWPVGAFPG PQGPYYCGVG ADKIWGRDIS DAHYKACLYA GINISGTNGE VMPGQWEFQV GPSVGIDAGD HVWCARYLLE RITEQAGVVL TLDPKPIEGD
301: WNGAGCHTNY STKSMREEGG FEVIKKAILN LSLRHKEHIS AYGEGNERRL TGKHETASID QFSWGVANRG CSIRVGRDTE AKGKGYLEDR RPASNMDPYI
401: VTSLLAETTL LWEPTLEAEA LAAQKLSLNV

Arabidopsis Description

GLN2Glutamine synthetase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q43127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.