Factsheet for Zm00001d051804_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30808	Sorghum	cytosol	95.79	95.79
Os02t0735200-02	Rice	cytosol	94.1	94.1
Zm00001d017958_P002	Maize	cytosol	97.19	94.02
TraesCS6A01G298100.2	Wheat	cytosol	91.57	91.57
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	91.29	91.29
KRH48674	Soybean	endoplasmic reticulum	88.76	88.76
KRH39031	Soybean	cytosol, nucleus	88.2	88.2
VIT_01s0011g02200.t01	Wine grape	cytosol	87.92	87.92
AT3G17820.1	Thale cress	cytosol	85.39	85.88
Bra022247.1-P	Field mustard	cytosol	84.55	85.03
CDX92165	Canola	cytosol	84.55	85.03
CDX95818	Canola	cytosol	84.55	85.03
CDY68179	Canola	cytosol	83.71	84.18
CDY68590	Canola	cytosol	83.71	84.18
Bra021276.1-P	Field mustard	cytosol	83.43	83.9
Zm00001d033747_P001	Maize	cytosol, extracellular	83.99	81.03
CDX75942	Canola	cytosol	80.62	80.85
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	91.85	80.54
CDX82343	Canola	cytosol	80.06	80.28
Bra018729.1-P	Field mustard	cytosol	78.65	79.55
AT1G48470.1	Thale cress	cytosol	78.65	79.32
PGSC0003DMT400037457	Potato	cytosol, plastid	70.79	79.0
CDY49672	Canola	cytosol	78.65	78.43
CDX93671	Canola	cytosol	78.65	78.43
Bra001686.1-P	Field mustard	endoplasmic reticulum, golgi	76.97	77.4
Solyc12g041870.1.1	Tomato	cytosol	76.69	76.04
Zm00001d028260_P005	Maize	cytosol	82.02	74.68
Zm00001d048050_P004	Maize	cytosol	71.63	73.91
Bra032257.1-P	Field mustard	cytosol	28.93	60.59
PGSC0003DMT400036605	Potato	cytosol	14.33	57.95
CDY27610	Canola	cytosol	32.87	55.98
CDY27650	Canola	mitochondrion	25.0	52.66
CDX98429	Canola	plastid	21.91	37.14

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EntrezGene:542401	ProteinID:AQK55152.1	EMBL:BT087794	UniProt:C4JAE7	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	PFAM:PF00120
PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230
SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0001A4C093	EnsemblPlantsGene:Zm00001d051804	EnsemblPlants:Zm00001d051804_P001	EnsemblPlants:Zm00001d051804_T001

Description

glutamine synthetase5Glutamine synthetase root isozyme 4

Coordinates

chr4:-:170036696..170039992

Molecular Weight (calculated)

39241.3 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.415

Length

356 amino acids

Sequence
(BLAST)

001: MACLTDLVNL NLSDTTEKII AEYIWIGGSG MDLRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDCYTPAGE
101: PIPTNKRYSA AKIFSSLEVA AEEPWYGIEQ EYTLLQKDTN WPLGWPIGGF PGPQGPYYCG IGAEKSFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISS GDQVWVARYI LERITEIAGV VVTFDPKPIP GDWNGAGAHT NYSTESMRKE GGYEVIKAAI EKLKLRHKEH IAAYGEGNER RLTGRHETAD
301: INTFSWGVAN RGASVRVGRE TEQNGKGYFE DRRPASNMDP YVVTSMIAET TIVWKP

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.