Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- cytosol 3
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022247.1-P | Field mustard | cytosol | 94.07 | 94.07 |
| CDX92165 | Canola | cytosol | 94.07 | 94.07 |
| CDX95818 | Canola | cytosol | 94.07 | 94.07 |
| CDY68590 | Canola | cytosol | 92.94 | 92.94 |
| CDY68179 | Canola | cytosol | 92.94 | 92.94 |
| Bra021276.1-P | Field mustard | cytosol | 92.66 | 92.66 |
| CDX75942 | Canola | cytosol | 89.55 | 89.3 |
| CDX82343 | Canola | cytosol | 88.7 | 88.45 |
| TraesCS6A01G298100.2 | Wheat | cytosol | 87.29 | 86.8 |
| Os02t0735200-02 | Rice | cytosol | 87.01 | 86.52 |
| TraesCS6B01G327500.1 | Wheat | cytosol, golgi, plastid, unclear | 87.01 | 86.52 |
| Bra001686.1-P | Field mustard | endoplasmic reticulum, golgi | 86.44 | 86.44 |
| KXG30808 | Sorghum | cytosol | 86.44 | 85.96 |
| AT5G37600.1 | Thale cress | cytosol | 86.16 | 85.67 |
| VIT_01s0011g02200.t01 | Wine grape | cytosol | 85.88 | 85.39 |
| Zm00001d051804_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 85.88 | 85.39 |
| AT1G48470.1 | Thale cress | cytosol | 82.77 | 83.0 |
| AT5G16570.1 | Thale cress | cytosol | 83.33 | 82.87 |
| AT1G66200.3 | Thale cress | cytosol | 84.18 | 81.64 |
| Zm00001d017958_P002 | Maize | cytosol | 84.75 | 81.52 |
| HORVU6Hr1G074030.2 | Barley | cytosol, mitochondrion, plastid | 86.72 | 75.62 |
| Solyc12g041870.1.1 | Tomato | cytosol | 75.42 | 74.37 |
| CDY27610 | Canola | cytosol | 37.01 | 62.68 |
| AT5G35630.1 | Thale cress | plastid | 74.58 | 61.4 |
| CDY27650 | Canola | mitochondrion | 27.97 | 58.58 |
| CDX98429 | Canola | plastid | 22.88 | 38.57 |
Protein Annotations
| KEGG:00220+6.3.1.2 | KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | MapMan:25.1.5.1.1 | Gene3D:3.10.20.70 |
| Gene3D:3.30.590.40 | EntrezGene:821050 | UniProt:A0A178VNQ6 | ProteinID:AEE76011.1 | ArrayExpress:AT3G17820 | EnsemblPlantsGene:AT3G17820 |
| RefSeq:AT3G17820 | TAIR:AT3G17820 | RefSeq:AT3G17820-TAIR-G | EnsemblPlants:AT3G17820.1 | TAIR:AT3G17820.1 | Symbol:ATGSKB6 |
| EMBL:AY088312 | ProteinID:BAB02705.1 | EMBL:BT004249 | EMBL:BT020327 | EMBL:BT020432 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0003824 | GO:GO:0004356 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005507 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006542 | GO:GO:0006807 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016874 | GO:GO:0022626 | GO:GO:0042128 | GO:GO:0042788 | GO:GO:0046686 | InterPro:Gln_synt_N |
| InterPro:Gln_synt_b-grasp | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_N_conserv_site | InterPro:Gln_synth_cat_dom | InterPro:Gln_synth_gly_rich_site | InterPro:IPR036651 |
| RefSeq:NP_188409.1 | ProteinID:OAP06482.1 | PFAM:PF00120 | PFAM:PF03951 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00180 | ScanProsite:PS00181 |
| PANTHER:PTHR20852 | PANTHER:PTHR20852:SF59 | UniProt:Q9LVI8 | SMART:SM01230 | SUPFAM:SSF54368 | SUPFAM:SSF55931 |
| UniParc:UPI000000144B | SEG:seg | : | : | : | : |
Description
GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
Coordinates
chr3:+:6097201..6099595
Molecular Weight (calculated)
38596.7 Da
IEP (calculated)
5.934
GRAVY (calculated)
-0.408
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.