Factsheet for Bra001686.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022247.1-P	Field mustard	cytosol	87.85	87.85
CDX75942	Canola	cytosol	86.72	86.48
AT3G17820.1	Thale cress	cytosol	86.44	86.44
CDX82343	Canola	cytosol	86.44	86.2
Bra021276.1-P	Field mustard	cytosol	85.88	85.88
Bra028132.1-P	Field mustard	cytosol	77.97	77.53
KXG30808	Sorghum	cytosol	77.68	77.25
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	77.4	76.97
TraesCS6A01G298100.2	Wheat	cytosol	77.4	76.97
Os02t0735200-02	Rice	cytosol	77.12	76.69
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	77.12	76.69
VIT_01s0011g02200.t01	Wine grape	cytosol	77.12	76.69
Bra018729.1-P	Field mustard	cytosol	75.99	76.42
Bra039756.1-P	Field mustard	cytosol	76.84	76.4
Bra023573.1-P	Field mustard	cytosol	76.55	76.12
Bra008612.1-P	Field mustard	cytosol	75.99	75.56
Zm00001d017958_P002	Maize	cytosol	75.99	73.1
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	77.4	67.49
Solyc12g041870.1.1	Tomato	cytosol	67.8	66.85
Bra032257.1-P	Field mustard	cytosol	29.94	62.35
Bra035529.1-P	Field mustard	plastid	69.77	57.71
Bra035392.1-P	Field mustard	plastid	69.77	57.71

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EnsemblPlantsGene:Bra001686	EnsemblPlants:Bra001686.1	EnsemblPlants:Bra001686.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	UniProt:M4CBV6	PFAM:PF00120	PFAM:PF03951
ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	SMART:SM01230	SUPFAM:SSF54368
SUPFAM:SSF55931	TMHMM:TMhelix	UniParc:UPI000254041A	SEG:seg	:	:

Description

AT3G17820 (E=6e-169) ATGSKB6, GLN1.3, GLN1;3 | ATGSKB6; copper ion binding / glutamate-ammonia ligase

Coordinates

chrA03:+:17858513..17860431

Molecular Weight (calculated)

38983.6 Da

IEP (calculated)

8.049

GRAVY (calculated)

-0.295

Length

354 amino acids

Sequence
(BLAST)

001: MDIRSKARVN LKLCFFHSSV FLLSVYCMIV LICFWMIKTL PGPVSDPSKL PKWNYDGSST GQASGDNSEV ILYPQAIFRD PFRRGDNILV MCDAYTPAGD
101: PIPTNKRHKA AKIFSHPNVA KEVPWYGIEQ EYTLMQKGVN WPIGWPIGGF PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGVN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV NVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLAVIKKAI EKLQVKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)

001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP

Arabidopsis Description

ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.