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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY16439 Canola cytosol 99.72 99.72
AT1G66200.3 Thale cress cytosol 95.22 92.88
Bra028132.1-P Field mustard cytosol 92.7 92.7
Solyc11g011380.1.1 Tomato extracellular 88.2 88.7
PGSC0003DMT400034421 Potato cytosol 88.2 88.7
Bra023573.1-P Field mustard cytosol 88.48 88.48
Bra008612.1-P Field mustard cytosol 88.2 88.2
KRH48674 Soybean endoplasmic reticulum 87.92 87.92
VIT_01s0011g02200.t01 Wine grape cytosol 87.64 87.64
KRH39031 Soybean cytosol, nucleus 87.36 87.36
Solyc05g051250.2.1 Tomato unclear 85.96 85.96
PGSC0003DMT400037822 Potato cytosol 85.39 85.39
Bra022247.1-P Field mustard cytosol 84.27 84.75
Bra021276.1-P Field mustard cytosol 83.71 84.18
Bra018729.1-P Field mustard cytosol 78.65 79.55
Bra001686.1-P Field mustard endoplasmic reticulum, golgi 76.4 76.84
Bra035392.1-P Field mustard plastid 79.21 65.89
Bra035529.1-P Field mustard plastid 78.93 65.65
Bra032257.1-P Field mustard cytosol 29.49 61.76
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2MapMan:25.1.5.1.1Gene3D:3.10.20.70
Gene3D:3.30.590.40ProteinID:AAX35342ProteinID:AAX35342.1EMBL:AY773089EnsemblPlantsGene:Bra039756EnsemblPlants:Bra039756.1
EnsemblPlants:Bra039756.1-PGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488
GO:GO:0005507GO:GO:0005524GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005829GO:GO:0005840GO:GO:0005886
GO:GO:0006542GO:GO:0006807GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009506GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009651
GO:GO:0009941GO:GO:0009987GO:GO:0010150GO:GO:0016020GO:GO:0016874GO:GO:0022626
GO:GO:0030312GO:GO:0048046InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_N_conserv_site
InterPro:Gln_synth_cat_domInterPro:Gln_synth_gly_rich_siteInterPro:IPR036651UniProt:M4FF84PFAM:PF00120PFAM:PF03951
ScanProsite:PS00180ScanProsite:PS00181PANTHER:PTHR20852PANTHER:PTHR20852:SF58SMART:SM01230SUPFAM:SSF54368
SUPFAM:SSF55931UniParc:UPI0002545B1E::::
Description
AT1G66200 (E=3e-208) ATGSR2 | ATGSR2; copper ion binding / glutamate-ammonia ligase
Coordinates
chrA02:-:9781555..9783552
Molecular Weight (calculated)
39204.1 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.441
Length
356 amino acids
Sequence
(BLAST)
001: MSLLTDLVNL DLSDNTEKII AEYIWGGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDTYTPAGE
101: PIPTNKRHAA AQIFSNPDVV AEVPWYGIEQ EYTLLQKDVN WPVGWPIGGF PGPQGPYYCS VGADKSFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEVWIARFI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI DKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFKWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YTVTSMIAET TLLWNP
Best Arabidopsis Sequence Match ( AT1G66200.1 )
(BLAST)
001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP
Arabidopsis Description
ATGSR2Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:F4ID91]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.