CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27610	Canola	cytosol	69.82	56.46
CDX84116	Canola	plastid	44.97	30.77
CDY68179	Canola	cytosol	62.13	29.66
CDY68590	Canola	cytosol	62.13	29.66
CDX95818	Canola	cytosol	61.54	29.38
CDX92165	Canola	cytosol	61.54	29.38
AT3G17820.1	Thale cress	cytosol	58.58	27.97
CDX82343	Canola	cytosol	57.99	27.61
CDX75942	Canola	cytosol	57.99	27.61
CDX98429	Canola	plastid	33.73	27.14
CDX85499	Canola	cytosol	54.44	25.84
KXG30808	Sorghum	cytosol	54.44	25.84
Os02t0735200-02	Rice	cytosol	54.44	25.84
CDY38104	Canola	cytosol	54.44	25.84
CDY49656	Canola	cytosol	53.85	25.56
VIT_01s0011g02200.t01	Wine grape	cytosol	53.25	25.28
CDX69442	Canola	cytosol	53.25	25.28
CDY01727	Canola	cytosol	52.07	25.21
CDY52941	Canola	cytosol	52.66	25.0
CDY16439	Canola	cytosol	52.66	25.0
TraesCS6A01G298100.2	Wheat	cytosol	52.66	25.0
CDX74573	Canola	cytosol	52.66	25.0
Zm00001d051804_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	52.66	25.0
Zm00001d017958_P002	Maize	cytosol	53.85	24.73
TraesCS6B01G327500.1	Wheat	cytosol, golgi, plastid, unclear	52.07	24.72
CDY49672	Canola	cytosol	49.11	23.25
CDX93671	Canola	cytosol	49.11	23.25
Solyc12g041870.1.1	Tomato	cytosol	48.52	22.84
HORVU6Hr1G074030.2	Barley	cytosol, mitochondrion, plastid	52.66	21.92
CDY49365	Canola	plastid	50.3	21.57
CDX74644	Canola	plastid	50.89	20.09
CDY33684	Canola	plastid	50.89	17.59

Protein Annotations

EnsemblPlants:CDY27650	EnsemblPlantsGene:GSBRNA2T00038409001	Gene3D:3.30.590.40	GO:A0A078GM69	GO:GO:0003674	GO:GO:0003824
InterPro:Gln_synth/guanido_kin_cat_dom	PANTHER:PTHR20852	PANTHER:PTHR20852:SF59	ProteinID:CDY27650	ProteinID:CDY27650.1	SUPFAM:SSF55931
UniParc:UPI0004EE686A	UniProt:A0A078GM69	MapMan:35.1	:	:	:

Description

BnaA09g27570DBnaA09g27570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM69]

Coordinates

chrLK032207:-:549963..551241

Molecular Weight (calculated)

18878.3 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.536

Length

169 amino acids

Sequence
(BLAST)

001: MNHRYSKPSL NIVRPIRIPP TAFFYYVSPD LYFIMNSGNN ILVMCDAYTS AGNPIPTNKK HNVAKIFSNS KVASEEPWYG IEEEYTLMQK GGPYYCGVGA
101: DKAIGRDIMD AHYKACLYAG IGISGVNAEI PSRASTQNQS RLEQRRISSD KERDREASGE AQGEHCCVR

Best Arabidopsis Sequence Match ( AT3G17820.1 )
(BLAST)

001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG

Arabidopsis Description

GLN1-3Glutamine synthetase [Source:UniProtKB/TrEMBL;Acc:A0A178VNQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.