Factsheet for Os03t0712800-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91109	Sorghum	cytosol	87.03	87.74
Zm00001d033747_P001	Maize	cytosol, extracellular	87.03	87.26
HORVU4Hr1G007610.1	Barley	cytosol	85.14	87.02
TraesCS4B01G047400.1	Wheat	cytosol, golgi	85.14	87.02
TraesCS4D01G047400.1	Wheat	cytosol	84.86	86.74
TraesCS4A01G266900.1	Wheat	cytosol	83.78	85.64
Os02t0735200-02	Rice	cytosol	80.54	83.71
KRG97948	Soybean	cytosol, endoplasmic reticulum, nucleus	80.27	83.43
GSMUA_Achr8P30880_001	Banana	cytosol	80.27	83.19
KRH17323	Soybean	cytosol	80.0	83.15
VIT_14s0006g00350.t01	Wine grape	cytosol	79.73	82.87
KRH30929	Soybean	endoplasmic reticulum	79.46	82.58
GSMUA_Achr1P22290_001	Banana	cytosol	79.46	82.35
KRH72976	Soybean	cytosol	79.19	82.3
Os03t0223400-01	Rice	cytosol, plasma membrane	77.84	80.67
KRH72975	Soybean	cytosol	50.0	73.12
Os04t0659100-01	Rice	plastid	72.16	62.38
KRH17322	Soybean	cytosol	41.89	61.51

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	MapMan:25.1.5.1.1	Gene3D:3.10.20.70
Gene3D:3.30.590.40	EntrezGene:4333896	ProteinID:AAK18848.1	EMBL:AB180689	ProteinID:ABF98528.1	EMBL:AK063913
EMBL:AK099290	ProteinID:BAF12981.1	ProteinID:BAS86052.1	ProteinID:EEE59806.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004356	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_N_conserv_site	InterPro:Gln_synth_cat_dom	InterPro:Gln_synth_gly_rich_site	InterPro:IPR036651	EnsemblPlantsGene:Os03g0712800	EnsemblPlants:Os03t0712800-02
PFAM:PF00120	PFAM:PF03951	ScanProsite:PS00180	ScanProsite:PS00181	PANTHER:PTHR20852	PANTHER:PTHR20852:SF58
UniProt:Q4W8D0	SMART:SM01230	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI000009D46E	RefSeq:XP_015628694.1
SEG:seg	:	:	:	:	:

Description

cytosolic glutamine synthase 3, cytosolic glutamine synthethase 1;3, GLUTAMINE SYNTHETASE 1;3, glutamine synthetase 1;3Similar to Glutamine synthetase root isozyme 2 (EC 6.3.1.2) (Glutamate--ammonia ligase). (Os03t0712800-02)

Coordinates

chr3:-:28822424..28826321

Molecular Weight (calculated)

40679.8 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.489

Length

370 amino acids

Sequence
(BLAST)

001: MSSSLLTDLV NLDLSESTDK VIAEYIWVGG TGMDVRSKAR TLSGPVDDPS KLPKWNFDGS STGQATGDDS EVILHPQAIF RDPFRKGKNI LVMCDCYAPN
101: GEPIPTNNRY NAARIFSHPD VKAEEPWYGI EQEYTLLQKH INWPLGWPLG GYPGPQGPYY CAAGADKSYG RDIVDAHYKA CLFAGINISG INAEVMPGQW
201: EFQIGPVVGV SAGDHVWVAR YILERITEIA GVVVSFDPKP IPGDWNGAGA HTNYSTKSMR SNGGYEVIKK AIKKLGMRHR EHIAAYGDGN ERRLTGRHET
301: ADINNFVWGV ANRGASVRVG RDTEKDGKGY FEDRRPASNM DPYLVTAMIA ETTILWEPSH GHGHGQSNGK

Best Arabidopsis Sequence Match ( AT5G37600.1 )
(BLAST)

001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP

Arabidopsis Description

GLN1-1Glutamine synthetase cytosolic isozyme 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.