Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 94.07 | 93.28 |
| KRH51778 | Soybean | endoplasmic reticulum | 60.17 | 60.68 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 57.63 | 59.13 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 55.93 | 57.89 |
| AT1G45145.1 | Thale cress | cytosol | 57.63 | 57.63 |
| Bra014037.1-P | Field mustard | cytosol | 57.63 | 57.63 |
| CDY36029 | Canola | cytosol | 57.63 | 57.63 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 61.02 | 56.69 |
| KRH61100 | Soybean | cytosol | 55.93 | 56.41 |
| Bra036335.1-P | Field mustard | cytosol | 55.93 | 56.41 |
| CDY53958 | Canola | cytosol | 55.93 | 56.41 |
| KRH15131 | Soybean | cytosol, nucleus | 56.78 | 56.3 |
| PGSC0003DMT400009623 | Potato | cytosol | 58.47 | 56.1 |
| Solyc04g080850.2.1 | Tomato | extracellular | 58.47 | 56.1 |
| AT5G42980.1 | Thale cress | cytosol | 55.93 | 55.93 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 52.54 | 54.39 |
| KRH05879 | Soybean | endoplasmic reticulum | 55.93 | 53.66 |
| CDY43592 | Canola | cytosol | 55.93 | 53.66 |
| CDY32970 | Canola | cytosol | 55.93 | 53.66 |
| Bra027469.1-P | Field mustard | cytosol | 55.93 | 53.66 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 54.24 | 53.33 |
| CDY39355 | Canola | cytosol | 53.39 | 52.94 |
| AT1G19730.1 | Thale cress | cytosol | 53.39 | 52.94 |
| PGSC0003DMT400009306 | Potato | cytosol | 52.54 | 52.54 |
| Bra025762.1-P | Field mustard | cytosol | 52.54 | 52.1 |
| CDY29406 | Canola | cytosol | 52.54 | 52.1 |
| Solyc02g084710.2.1 | Tomato | extracellular | 51.69 | 51.69 |
| KRH28739 | Soybean | cytosol | 50.85 | 50.0 |
| TraesCS2B01G260500.1 | Wheat | extracellular | 39.83 | 49.47 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 41.53 | 42.98 |
| TraesCS5B01G452700.1 | Wheat | cytosol, golgi, unclear | 47.46 | 42.75 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 53.39 | 39.87 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 39.83 | 35.88 |
| TraesCS1B01G311300.1 | Wheat | cytosol | 32.2 | 26.57 |
| TraesCS2B01G505100.1 | Wheat | cytosol | 29.66 | 25.18 |
| TraesCS3B01G453600.1 | Wheat | plastid | 33.05 | 20.63 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 |
| PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS1B01G339000 | EnsemblPlants:TraesCS1B01G339000.1 | TIGR:cd02947 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:566823535..566831413
Molecular Weight (calculated)
12859.6 Da
IEP (calculated)
4.951
GRAVY (calculated)
0.064
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEGKVIAI HSQEQWSTKI EEAGSSTNLV VIDFTATWCG PCRFISPILD EIAKKLPNVM FLKVDVDEMK SIAEEFSVEA MPTFVLMKEG KVVDKVVGAA
101: KEELSGKIAK HSATACAK
101: KEELSGKIAK HSATACAK
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.