Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 89.68 | 91.75 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 90.32 | 90.91 |
| TraesCS3B01G484600.1 | Wheat | cytosol | 75.16 | 84.73 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 83.87 | 84.69 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 71.29 | 70.83 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 70.32 | 69.87 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 69.68 | 68.57 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 43.23 | 50.95 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 46.13 | 43.33 |
| EER91098 | Sorghum | nucleus | 45.81 | 40.0 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 29.35 | 39.57 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 30.65 | 39.42 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 31.29 | 39.27 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 23.23 | 38.3 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 30.0 | 38.11 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 34.84 | 37.76 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 34.84 | 36.24 |
| CDX94520 | Canola | cytosol | 26.77 | 35.47 |
| CDY07541 | Canola | cytosol | 26.77 | 35.47 |
| CDY09318 | Canola | cytosol | 26.77 | 35.47 |
| CDY21311 | Canola | cytosol | 26.77 | 35.47 |
| Zm00001d033419_P001 | Maize | plastid | 30.65 | 33.93 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.84 | 33.64 |
| Bra035092.1-P | Field mustard | nucleus | 33.55 | 32.91 |
| CDX87407 | Canola | nucleus | 33.55 | 32.91 |
| KRH43767 | Soybean | nucleus | 26.77 | 32.81 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 31.29 | 32.01 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 31.61 | 31.72 |
| CDX88507 | Canola | nucleus | 30.32 | 31.54 |
| PGSC0003DMT400062617 | Potato | nucleus | 30.32 | 31.33 |
| AT4G19700.1 | Thale cress | cytosol | 30.65 | 31.25 |
| CDY26402 | Canola | cytosol | 29.68 | 31.08 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 29.68 | 31.08 |
| CDY71607 | Canola | cytosol | 30.65 | 31.05 |
| Bra012532.1-P | Field mustard | nucleus | 30.65 | 31.05 |
| CDY01615 | Canola | cytosol | 30.32 | 30.82 |
| KRH36722 | Soybean | nucleus | 30.65 | 30.65 |
| Solyc02g031710.2.1 | Tomato | nucleus | 30.65 | 30.65 |
| AT5G45100.1 | Thale cress | cytosol | 29.03 | 30.61 |
| KRH11729 | Soybean | nucleus | 30.65 | 30.35 |
| KRG89416 | Soybean | nucleus | 30.32 | 29.94 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 30.97 | 29.72 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 30.65 | 29.69 |
| CDY71192 | Canola | cytosol | 26.77 | 29.64 |
| Bra013423.1-P | Field mustard | nucleus | 27.74 | 29.05 |
| CDY13070 | Canola | cytosol | 26.13 | 29.03 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 26.13 | 29.03 |
| CDY51918 | Canola | cytosol | 26.77 | 28.92 |
| Bra034718.1-P | Field mustard | nucleus | 30.97 | 28.49 |
| KRH13682 | Soybean | nucleus | 30.97 | 28.49 |
| CDY18062 | Canola | cytosol | 25.81 | 28.37 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 25.81 | 28.37 |
| AT3G12920.1 | Thale cress | nucleus | 30.65 | 28.36 |
| CDX79294 | Canola | nucleus | 27.74 | 28.29 |
| CDY46345 | Canola | cytosol | 25.48 | 28.01 |
| CDY24237 | Canola | nucleus | 29.03 | 27.78 |
| AT1G79110.1 | Thale cress | nucleus | 31.94 | 27.65 |
| CDY64561 | Canola | nucleus | 30.32 | 27.65 |
| Bra001477.1-P | Field mustard | nucleus | 30.32 | 27.65 |
| CDY43390 | Canola | cytosol | 28.71 | 27.38 |
| Bra039354.1-P | Field mustard | cytosol | 28.71 | 27.38 |
| CDX82568 | Canola | nucleus | 30.0 | 27.35 |
| TraesCS2B01G306500.1 | Wheat | cytosol | 27.74 | 26.54 |
| Solyc02g069180.2.1 | Tomato | plastid | 23.23 | 25.44 |
| TraesCS2B01G306600.1 | Wheat | cytosol | 26.45 | 25.39 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 25.48 | 24.23 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 23.87 | 21.89 |
| CDY23552 | Canola | cytosol | 13.55 | 19.35 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 19.03 | 16.91 |
| TraesCS4B01G215100.1 | Wheat | plastid | 16.45 | 15.04 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G019600.1 | EnsemblPlantsGene:TraesCS4B01G019600 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF12 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:14054651..14055886
Molecular Weight (calculated)
32842.1 Da
IEP (calculated)
6.991
GRAVY (calculated)
-0.230
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDLQRLRH MLLATGGGHH QLAGRPGAPT AVMTGPCYGA GATGQQLGCQ PYADVFTPPP PTMSAADRYS ELLALAAVDL LRKGDGAQEM TSGNKRRRVD
101: EGASSSVLGQ VLAAHAQQQA VAVDHILHRH ARKMWAALAE QRRSHLRLIV SAVEARAAKR LKAKDDEIER VRGMNWALEE RLRSLYMEAQ MWRDVAQSHD
201: AAASVLRADL QRVLDAQAVR GGGDGQDQDD AESCCWGENQ APVCAEEEEA EVGTPAPTGV GRCKGCGDGA AVVLLLPCRH LCVCAPCAAS AQACPSCGCA
301: KNGSVCVNFS
101: EGASSSVLGQ VLAAHAQQQA VAVDHILHRH ARKMWAALAE QRRSHLRLIV SAVEARAAKR LKAKDDEIER VRGMNWALEE RLRSLYMEAQ MWRDVAQSHD
201: AAASVLRADL QRVLDAQAVR GGGDGQDQDD AESCCWGENQ APVCAEEEEA EVGTPAPTGV GRCKGCGDGA AVVLLLPCRH LCVCAPCAAS AQACPSCGCA
301: KNGSVCVNFS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.