Factsheet for GSMUA_Achr7P00850_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11160_001
GSMUA_Achr1P23560_001
GSMUA_Achr3P00510_001
GSMUA_Achr3P05670_001
GSMUA_Achr3P27880_001
GSMUA_Achr4P17120_001
GSMUA_Achr4P20600_001
GSMUA_Achr4P22890_001
GSMUA_Achr5P04870_001
GSMUA_Achr5P14780_001
GSMUA_Achr5P21910_001
GSMUA_Achr6P03810_001
GSMUA_Achr7P01240_001
GSMUA_Achr7P15930_001
GSMUA_Achr7P24090_001
GSMUA_Achr8P09080_001
GSMUA_Achr9P22950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	GSMUA_Achr10P...	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr1P23560_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P00510_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P05670_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P27880_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr4P20600_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr5P04870_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr5P21910_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr6P03810_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr7P15930_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr9P22950_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr1P11160_001	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr8P09080_001	AT2G43370.1	21798944
AT4G19700.1	GSMUA_Achr7P24090_001	AT3G13860.1	21798944
AT4G19700.1	GSMUA_Achr4P17120_001	AT4G02770.1	21798944
AT4G19700.1	GSMUA_Achr5P14780_001	AT4G02770.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr1P23560_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P00510_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P05670_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P27880_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr4P20600_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr5P04870_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr5P21910_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr6P03810_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr7P15930_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr9P22950_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr11P...	AT5G08330.1	21798944
AT4G19700.1	GSMUA_Achr4P22890_001	AT5G38640.1	21798944
AT4G19700.1	GSMUA_Achr7P01240_001	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13160_001	Banana	plastid	65.65	61.13
GSMUA_Achr4P23050_001	Banana	nucleus	49.13	60.11
GSMUA_Achr5P02100_001	Banana	plastid	63.04	59.43
GSMUA_Achr4P32070_001	Banana	nucleus	68.26	54.9
GSMUA_Achr4P28300_001	Banana	nucleus	56.96	54.36
GSMUA_Achr6P31690_001	Banana	nucleus	63.91	49.33
GSMUA_Achr9P09830_001	Banana	nucleus	61.3	43.93
KRH43767	Soybean	nucleus	42.61	38.74
VIT_19s0027g00740.t01	Wine grape	nucleus	50.43	37.54
CDX88507	Canola	nucleus	46.96	36.24
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	35.65	34.31
CDX87407	Canola	nucleus	46.52	33.86
Bra035092.1-P	Field mustard	nucleus	46.52	33.86
TraesCS3B01G484600.1	Wheat	cytosol	39.57	33.09
VIT_10s0042g01070.t01	Wine grape	nucleus	43.48	33.0
EER91098	Sorghum	nucleus	50.87	32.96
CDY21311	Canola	cytosol	33.48	32.91
CDX94520	Canola	cytosol	33.48	32.91
CDY09318	Canola	cytosol	33.48	32.91
CDY07541	Canola	cytosol	33.48	32.91
CDX79294	Canola	nucleus	43.48	32.89
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	46.09	32.82
TraesCS3D01G441000.1	Wheat	mitochondrion	41.3	32.76
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	46.52	32.42
TraesCS3A01G448500.1	Wheat	mitochondrion	41.3	32.42
TraesCS3D01G441300.1	Wheat	mitochondrion	40.87	32.41
TraesCS7D01G431300.1	Wheat	mitochondrion	43.91	32.27
PGSC0003DMT400062617	Potato	nucleus	41.74	32.0
CDY26402	Canola	cytosol	40.87	31.76
CDY43390	Canola	cytosol	44.78	31.69
Bra039354.1-P	Field mustard	cytosol	44.78	31.69
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	40.43	31.42
CDY24237	Canola	nucleus	43.91	31.17
TraesCS7B01G340700.1	Wheat	mitochondrion	42.17	31.09
AT3G12920.1	Thale cress	nucleus	45.22	31.04
AT5G45100.1	Thale cress	cytosol	39.57	30.95
KRH50476	Soybean	cytosol, nucleus, plastid	43.04	30.94
TraesCS7A01G442300.1	Wheat	mitochondrion	42.61	30.91
TraesCS7A01G442100.1	Wheat	mitochondrion	42.17	30.89
TraesCS7B01G340500.1	Wheat	mitochondrion	42.17	30.79
TraesCS7B01G340600.1	Wheat	mitochondrion	41.74	30.77
CDY71192	Canola	cytosol	37.39	30.71
TraesCS7A01G441900.1	Wheat	mitochondrion	42.17	30.7
HORVU6Hr1G021960.1	Barley	plastid	34.78	30.65
HORVU6Hr1G021880.1	Barley	plastid	34.78	30.65
Bra034718.1-P	Field mustard	nucleus	44.78	30.56
Solyc02g031710.2.1	Tomato	nucleus	40.87	30.32
Bra001477.1-P	Field mustard	nucleus	44.78	30.29
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	40.43	30.29
HORVU4Hr1G003180.3	Barley	mitochondrion	40.43	30.29
KRH13682	Soybean	nucleus	44.35	30.27
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	41.3	30.25
TraesCS7D01G431200.1	Wheat	mitochondrion	40.43	30.19
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	39.57	30.03
CDY64561	Canola	nucleus	44.35	30.0
CDX82568	Canola	nucleus	44.35	30.0
KRG89416	Soybean	nucleus	40.87	29.94
CDY13070	Canola	cytosol	36.09	29.75
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	36.09	29.75
TraesCS6B01G149100.1	Wheat	nucleus	33.91	29.66
AT1G79110.1	Thale cress	nucleus	46.09	29.61
CDY18062	Canola	cytosol	36.09	29.43
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	36.09	29.43
TraesCS4B01G019600.1	Wheat	mitochondrion	39.57	29.35
TraesCS6D01G110700.1	Wheat	nucleus	33.48	29.28
TraesCS6A01G120700.1	Wheat	nucleus	33.48	29.28
HORVU7Hr1G100540.2	Barley	mitochondrion	38.7	29.28
TraesCS4A01G293700.1	Wheat	mitochondrion	39.13	29.22
CDY46345	Canola	cytosol	35.65	29.08
Bra013423.1-P	Field mustard	nucleus	37.39	29.05
KRH36722	Soybean	nucleus	39.13	29.03
CDY51918	Canola	cytosol	36.09	28.92
KRH11729	Soybean	nucleus	39.13	28.75
Solyc02g069180.2.1	Tomato	plastid	35.22	28.62
AT4G19700.1	Thale cress	cytosol	37.83	28.62
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	33.48	28.41
GSMUA_Achr2P12040_001	Banana	plastid	32.61	27.88
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	33.91	27.08
CDY01615	Canola	cytosol	35.65	26.89
Bra012532.1-P	Field mustard	nucleus	35.22	26.47
CDY71607	Canola	cytosol	35.22	26.47
Zm00001d033419_P001	Maize	plastid	32.17	26.43
GSMUA_Achr2P21330_001	Banana	nucleus	31.74	25.44
GSMUA_Achr6P11810_001	Banana	nucleus	33.48	25.33
GSMUA_Achr10P...	Banana	nucleus	33.91	24.53
GSMUA_Achr1P00560_001	Banana	nucleus	28.26	22.49
GSMUA_Achr11P...	Banana	nucleus	30.87	22.26
CDY23552	Canola	cytosol	20.87	22.12
GSMUA_Achr4P30100_001	Banana	plastid	29.13	21.97
GSMUA_Achr10P...	Banana	nucleus	30.0	21.7
GSMUA_Achr4P21690_001	Banana	nucleus	30.43	21.6
GSMUA_Achr6P08300_001	Banana	plastid	32.17	21.39
GSMUA_Achr6P16260_001	Banana	nucleus	31.3	21.36
GSMUA_Achr2P18250_001	Banana	nucleus	28.7	20.0
GSMUA_Achr6P10180_001	Banana	plastid	29.13	19.31
GSMUA_Achr11P...	Banana	nucleus	30.87	18.98
GSMUA_Achr8P14860_001	Banana	nucleus	27.39	18.69

Protein Annotations

EnsemblPlants:GSMUA_Achr7P00850_001	EnsemblPlants:GSMUA_Achr7T00850_001	EnsemblPlantsGene:GSMUA_Achr7G00850_001	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000294BD5F	UniProt:M0TDM5
MapMan:35.1	:	:	:	:	:

Description

protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G00850_001]

Coordinates

chr7:-:677047..677831

Molecular Weight (calculated)

25058.1 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.145

Length

230 amino acids

Sequence
(BLAST)

001: MGFLSPVSGA AAAPGSVLGF NNVASAAVLA PRKRLRQVSL LGDDMSSHLQ QQVLDIDRLI LQHVILRLTE RRKRFTTQIL AALEEGMSKR LRASQEEVAR
101: LGKMNWALEE RIKSLCVENQ MWRDMAQSNE ATANALRANL EQFLAAQARA EEEAATADDA ESCCCVGDGE EEAGVRREWR RACRSCHDGE PSVLLLPCRH
201: LCLCAACGPA VDACPVCQCS KSGSVCINMS

Best Arabidopsis Sequence Match ( AT1G79110.2 )
(BLAST)

001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.