Factsheet for GSMUA_Achr4P22890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P05940_001
GSMUA_Achr3P07200_001
GSMUA_Achr3P25070_001
GSMUA_Achr4P00500_001
GSMUA_Achr5P05820_001
GSMUA_Achr5P05830_001
GSMUA_Achr5P20860_001
GSMUA_Achr6P02720_001
GSMUA_Achr6P36740_001
GSMUA_Achr7P02490_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P11160_001
GSMUA_Achr8P23160_001
GSMUA_Achr9P15480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38640.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38640.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G38640.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G38640.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G38640.1	GSMUA_Achr3P07200_001	AT1G37130.1	21798944
AT5G38640.1	GSMUA_Achr5P05820_001	AT1G37130.1	21798944
AT5G38640.1	GSMUA_Achr5P05830_001	AT1G37130.1	21798944
AT5G38640.1	GSMUA_Achr8P23160_001	AT1G37130.1	21798944
AT5G38640.1	GSMUA_Achr9P15480_001	AT1G37130.1	21798944
AT5G38640.1	GSMUA_Achr7P02490_001	AT1G60080.1	21798944
AT5G38640.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT5G38640.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT5G38640.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT5G38640.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT5G38640.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT5G38640.1	GSMUA_Achr11P...	AT4G00150.1	21798944
AT5G38640.1	GSMUA_Achr11P...	AT4G00150.1	21798944
AT5G38640.1	GSMUA_Achr1P05940_001	AT4G00150.1	21798944
AT5G38640.1	GSMUA_Achr5P20860_001	AT4G00150.1	21798944
AT5G38640.1	GSMUA_Achr6P36740_001	AT4G00150.1	21798944
AT5G38640.1	GSMUA_Achr8P11160_001	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645200-01	Rice	cytosol, plastid	19.79	86.67
GSMUA_Achr7P01240_001	Banana	cytosol	81.89	83.28
Zm00001d033223_P003	Maize	cytosol	28.16	79.4
VIT_14s0083g00170.t01	Wine grape	cytosol	58.9	78.66
AT2G44070.1	Thale cress	cytosol	38.2	75.38
TraesCS5D01G384000.3	Wheat	mitochondrion	66.21	70.96
TraesCS5B01G376300.1	Wheat	mitochondrion	66.06	70.8
TraesCS5A01G374400.3	Wheat	mitochondrion	65.75	70.47
Zm00001d013692_P001	Maize	cytosol	63.62	68.64
CDY49077	Canola	cytosol, plastid	53.42	68.42
HORVU5Hr1G092900.2	Barley	mitochondrion	65.75	67.82
Os12t0617100-01	Rice	mitochondrion	62.1	67.22
KXG24018	Sorghum	mitochondrion, plastid	61.03	67.17
CDX74513	Canola	nucleus	63.93	66.67
CDY01647	Canola	cytosol	63.77	66.61
VIT_17s0000g04230.t01	Wine grape	plastid	65.75	66.56
Bra028196.1-P	Field mustard	nucleus	63.77	66.51
KRH01494	Soybean	nucleus	64.23	66.35
PGSC0003DMT400026040	Potato	cytosol	63.77	65.78
Solyc02g089810.2.1	Tomato	nucleus	63.77	65.78
AT5G38640.1	Thale cress	cytosol	63.93	65.42
KRG93828	Soybean	endoplasmic reticulum, nucleus	65.6	65.3
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	54.03	65.02
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	54.34	64.56
KRH18264	Soybean	cytosol	64.69	64.49
PGSC0003DMT400059378	Potato	cytosol, plastid	59.21	62.74
CDY27424	Canola	cytosol	11.42	61.48
Solyc12g038340.1.1	Tomato	nucleus	57.69	61.13
EER91168	Sorghum	plastid	64.99	59.14
CDX77270	Canola	mitochondrion	56.47	56.47
CDY16477	Canola	mitochondrion	56.01	56.01
Bra014165.1-P	Field mustard	mitochondrion	55.86	55.86
KRH54799	Soybean	plastid	57.53	55.43
AT1G48970.1	Thale cress	mitochondrion	54.79	54.05
GSMUA_Achr11P...	Banana	cytosol	10.96	25.99
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	13.7	22.84
GSMUA_Achr11P...	Banana	cytosol	9.89	20.44
GSMUA_Achr11P...	Banana	cytosol	2.59	16.35

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22890_001	EnsemblPlants:GSMUA_Achr4T22890_001	EnsemblPlantsGene:GSMUA_Achr4G22890_001	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233
PANTHER:PTHR10233:SF27	PFAM:PF01008	SEG:seg	SUPFAM:SSF100950	UniParc:UPI000294A537	UniProt:M0SRA0
MapMan:17.4.1.2.3.4	:	:	:	:	:

Description

Putative Translation initiation factor eIF-2B subunit delta [Source:GMGC_GENE;Acc:GSMUA_Achr4G22890_001]

Coordinates

chr4:+:23164746..23175679

Molecular Weight (calculated)

71107.5 Da

IEP (calculated)

9.859

GRAVY (calculated)

-0.264

Length

657 amino acids

Sequence
(BLAST)

001: MDMRRPPRTV SDPKVRQVGF VTPSGAPPTR SLSDAPTTVA AVASAASASS PPSGEISLPG SSLSPVMIPP PRHASSDGRP SAPVAVVLGT PPSASPSSRT
101: DNAASEFSEE TMSPWHGRSG TAKVASSFPG STSEMIVMKT GVGGGGGAGS TPKSPLTTAS VVKTLPGISE KEREVLMGTQ NDGAGVSKTL KEKTTKAERR
201: AVQEAQRAAK AAAKEAVKPS AASGSAVVAN TKQGKIVKPP SQKKDGPQIA PPSGSSEKKV VDRPPEKDRK KDVPAPRMQF DDKHRVEKAK RRAVVNQFEA
301: KNRVELFRHL PQYIHGTQLP DLEGKFFQLD PMHPSVYKVG LQYLSGQISG GNARCIAMLL AFREAIRDYS TPPEKALVRD LTAKISSYVS FLIECRPLSI
401: SMGNTIKFLK NRIAKLPDTM SESEAKYSLQ SDIDRFINEK IVIADKVIIR HAVTKIRDGD VLLTYGLSSV VEMILVYAHE VGKQFRVVIV DSRPKLEGQV
501: LLHRLVAKGL NCTYTHINAI SYIMHEVTRV FLGAASVLSN GTVYSRVGTA CVAMVANAFR VPVLICCEAY KFHERVQLDS ICSNELGDPD VISKVSGRQD
601: LNHLDNWADN ENLQLLNLSY DATPSDYVSM IITDYGMLPP SSVPVIVREY RRENLWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.