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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG88927
KRH01293
KRH01295
KRH01298
KRH03466
KRH16280
KRH16605
KRH16606
KRH18814
KRH18816
KRH24006
KRH27971
KRH29310
KRH45053
KRH53180
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38640.1 KRH16605 AT1G37130.1 21798944
AT5G38640.1 KRH16606 AT1G37130.1 21798944
AT5G38640.1 KRH18814 AT1G37130.1 21798944
AT5G38640.1 KRH18816 AT1G37130.1 21798944
AT5G38640.1 KRH53180 AT1G37130.1 21798944
AT5G38640.1 KRH01293 AT1G60080.1 21798944
AT5G38640.1 KRH01295 AT1G60080.1 21798944
AT5G38640.1 KRH01298 AT1G60080.1 21798944
AT5G38640.1 KRH16280 AT1G60080.1 21798944
AT5G38640.1 KRH45053 AT1G60080.1 21798944
AT5G38640.1 KRH03466 AT3G47620.1 21798944
AT5G38640.1 KRH54542 AT3G47620.1 21798944
AT5G38640.1 KRH56919 AT3G47620.1 21798944
AT5G38640.1 KRH63357 AT3G47620.1 21798944
AT5G38640.1 KRH24006 AT3G48150.1 21798944
AT5G38640.1 KRH27971 AT3G48150.1 21798944
AT5G38640.1 KRH29310 AT3G48150.1 21798944
AT5G38640.1 KRH77487 AT3G48150.1 21798944
AT5G38640.1 KRG88927 AT4G00150.1 21798944
AT5G38640.1 KRH65380 AT4G00150.1 21798944
AT5G38640.1 KRH75351 AT4G00150.1 21798944
AT5G38640.1 KRH76167 AT4G00150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH18264 Soybean cytosol 92.58 92.72
KRH01494 Soybean nucleus 79.85 82.86
VIT_14s0083g00170.t01 Wine grape cytosol 60.45 81.1
Os03t0645200-01 Rice cytosol, plastid 18.33 80.67
Zm00001d033223_P003 Maize cytosol 27.42 77.68
AT2G44070.1 Thale cress cytosol 38.48 76.28
CDY49077 Canola cytosol, plastid 54.85 70.57
Bra028196.1-P Field mustard nucleus 66.36 69.52
Solyc02g089810.2.1 Tomato nucleus 66.97 69.39
PGSC0003DMT400026040 Potato cytosol 66.97 69.39
CDX74513 Canola nucleus 66.06 69.21
CDY01647 Canola cytosol 65.91 69.16
AT5G38640.1 Thale cress cytosol 65.15 66.98
KRH03820 Soybean cytosol, mitochondrion, nucleus, plasma membrane 55.45 66.18
KXG24018 Sorghum mitochondrion, plastid 59.39 65.66
GSMUA_Achr4P22890_001 Banana cytosol 65.3 65.6
GSMUA_Achr7P01240_001 Banana cytosol 63.18 64.55
TraesCS5D01G384000.3 Wheat mitochondrion 59.39 63.95
CDY27424 Canola cytosol 11.82 63.93
TraesCS5B01G376300.1 Wheat mitochondrion 59.24 63.78
Zm00001d031081_P001 Maize endoplasmic reticulum, vacuole 52.73 63.74
Zm00001d013692_P001 Maize cytosol 58.64 63.55
TraesCS5A01G374400.3 Wheat mitochondrion 58.94 63.46
Os12t0617100-01 Rice mitochondrion 56.97 61.94
HORVU5Hr1G092900.2 Barley mitochondrion 58.64 60.75
CDY16477 Canola mitochondrion 57.88 58.14
CDX77270 Canola mitochondrion 57.88 58.14
Bra014165.1-P Field mustard mitochondrion 57.73 57.99
KRH54799 Soybean plastid 58.94 57.04
AT1G48970.1 Thale cress mitochondrion 56.97 56.46
EER91168 Sorghum plastid 59.24 54.16
KRH47707 Soybean cytosol 13.03 24.78
KRH69015 Soybean cytosol 13.94 24.08
KRG97288 Soybean extracellular 13.79 22.98
KRH48472 Soybean endoplasmic reticulum 12.73 20.24
KRH39206 Soybean cytosol 12.73 20.24
KRH30036 Soybean cytosol 11.97 19.04
Protein Annotations
KEGG:00270+5.3.1.23EntrezGene:100775998MapMan:17.4.1.2.3.4Gene3D:3.40.50.10470EMBL:ACUP02011630EnsemblPlantsGene:GLYMA_19G044300
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0044237UniProt:I1N6M9InterPro:IF-2B-relatedEnsemblPlants:KRG93828ProteinID:KRG93828
ProteinID:KRG93828.1InterPro:NagB/RpiA_transferase-likePFAM:PF01008PANTHER:PTHR10233PANTHER:PTHR10233:SF28MetaCyc:PWY-4361
MetaCyc:PWY-7174SUPFAM:SSF100950UniParc:UPI000233E34CSEG:seg::
Description
hypothetical protein
Coordinates
chr19:-:6526761..6534520
Molecular Weight (calculated)
71214.7 Da
IEP (calculated)
10.008
GRAVY (calculated)
-0.209
Length
660 amino acids
Sequence
(BLAST)
001: MDPSRRAPRA VIDPIPKIRQ VGFFAPPERS QSGPPDPTHS SPPISSSLSP VMIPPPRHLS DNLLLHAPRP ASSPLSAAAA AGGSGNSFDY GAVFFPAPLS
101: PAIPSSSYSS RIIATTGEGG FFKGNGAGGG KVAASSFPRG GFDLTAMKKA AAASVVVPAS ELTTVSVVND SLGIPEKEKG NKAGGSAVEV KDQPNSSKQQ
201: KPKLSKAERR ALQESQRAAK AAAKGEGSKA SGTVATMNAK PAKAVKPAQK VDNAAVAASE KKGGEIPPEK DRKKDAPQPR MQYDDKSRVE KAKRRAVVKQ
301: TEARNRVELF RHLPQYEHGS QLPDLEAKFF HLSPVHPSVY KVGLQYLTGD IAGGNARCIA MLQAFQEAIK DYKVPHEKTL VRDLTAKISS YVSFLIECRP
401: LSISMGNAIR FLKSHIAKLP LTLSESEAKA SLQSDIERFI SEKIILANKV IVKHAVTKIR DGDVLLTYGS SSAVEMILLH AHELGKQFRV VVVDSRPKLR
501: GQLLLRRLVE KGLSCTYTHI NAVSYIMHEV TRVFLGASAV LSNGTVYSRV GTACVAMVAH AFRVPVIVCC EAYKFHERVQ LDSICSNELG NPDVISNVLG
601: REDVKHLDGW ANIENLQLLN LVYDATPSDY VSMIVTDYGM VPPTSVPVIV REYGREQVWI
Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.