CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45053	Soybean	cytosol, nucleus	80.65	33.11
KRH16280	Soybean	nucleus	74.19	29.97
CDY33620	Canola	cytosol	46.77	29.0
VIT_08s0007g08550.t01	Wine grape	cytosol	69.35	27.65
Solyc10g080130.1.1	Tomato	cytosol	65.32	26.3
PGSC0003DMT400019417	Potato	cytosol	63.71	26.07
GSMUA_Achr7P02490_001	Banana	cytosol	58.87	25.26
Zm00001d049855_P002	Maize	nucleus	43.55	25.0
Solyc06g075390.2.1	Tomato	nucleus	63.71	24.46
PGSC0003DMT400060984	Potato	golgi	63.71	24.01
AT1G60080.1	Thale cress	cytosol	56.45	23.18
Bra027816.1-P	Field mustard	cytosol	54.03	22.26
CDY56983	Canola	cytosol	54.03	22.26
CDY63123	Canola	cytosol	54.03	22.26
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	50.0	20.26
TraesCS4D01G074300.1	Wheat	cytosol	49.19	19.93
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	49.19	19.93
Os11t0311300-03	Rice	cytosol	47.58	19.28
EES15299	Sorghum	cytosol	45.97	18.63
HORVU4Hr1G012650.14	Barley	cytosol	50.0	18.4
Zm00001d031643_P001	Maize	cytosol	45.97	16.01
KRH70124	Soybean	endoplasmic reticulum, nucleus	25.81	11.19
KRH08468	Soybean	cytosol	25.81	11.19
KRH44119	Soybean	plasma membrane	15.32	8.41
KRH77682	Soybean	cytosol	21.77	6.18
KRH27808	Soybean	nucleus	21.77	5.74
KRH14064	Soybean	cytosol, nucleus, plastid	11.29	5.65
Zm00001d021033_P001	Maize	cytosol	4.84	4.23
Zm00001d049854_P001	Maize	cytosol	4.03	3.65
KRH01295	Soybean	plastid	2.42	3.33
Zm00001d044450_P001	Maize	cytosol	3.23	3.31
KRH01298	Soybean	cytosol, nucleus, plastid	1.61	1.8

Protein Annotations

Gene3D:3.30.230.70	MapMan:35.2	UniProt:A0A0R0FFF8	EMBL:ACUP02011510	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
EnsemblPlantsGene:GLYMA_18G2676002	GO:GO:0000178	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006396	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
InterPro:IPR027408	ProteinID:KRH01290.1	ProteinID:KRH01291.1	ProteinID:KRH01292.1	EnsemblPlants:KRH01293	ProteinID:KRH01293
ProteinID:KRH01293.1	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	SUPFAM:SSF55666
UniParc:UPI0006EDB81B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:55186346..55187396

Molecular Weight (calculated)

13700.5 Da

IEP (calculated)

5.189

GRAVY (calculated)

-0.256

Length

124 amino acids

Sequence
(BLAST)

001: QIPSIAMNDD GKIVLVSDED GQKRAQEPVN KEKRKLTLRS IPFSLTCILH KNYILADPTA EEESIMETHV TVVLDTSGQL ISLYKPGGPV LAYTSAIQDC
101: AALTRQRVKE LNNFLDKANS AMEV

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.