Factsheet for TraesCS4D01G074300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	99.35	99.35
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	99.35	99.35
HORVU4Hr1G012650.14	Barley	cytosol	98.04	89.02
Os11t0311300-03	Rice	cytosol	85.95	85.95
EES15299	Sorghum	cytosol	85.62	85.62
Zm00001d049854_P001	Maize	cytosol	36.6	81.75
Zm00001d021033_P001	Maize	cytosol	37.58	80.99
Zm00001d044450_P001	Maize	cytosol	31.7	80.17
Zm00001d031643_P001	Maize	cytosol	82.35	70.79
Zm00001d049855_P002	Maize	nucleus	49.67	70.37
GSMUA_Achr7P02490_001	Banana	cytosol	64.05	67.82
KRH01295	Soybean	plastid	18.63	63.33
PGSC0003DMT400019417	Potato	cytosol	59.48	60.07
VIT_08s0007g08550.t01	Wine grape	cytosol	59.8	58.84
AT1G60080.1	Thale cress	cytosol	57.52	58.28
CDY63123	Canola	cytosol	57.19	58.14
Bra027816.1-P	Field mustard	cytosol	57.19	58.14
CDY56983	Canola	cytosol	56.86	57.81
Solyc10g080130.1.1	Tomato	cytosol	57.84	57.47
KRH16280	Soybean	nucleus	57.19	57.0
KRH45053	Soybean	cytosol, nucleus	56.21	56.95
Solyc06g075390.2.1	Tomato	nucleus	59.48	56.35
PGSC0003DMT400060984	Potato	golgi	52.94	49.24
KRH01293	Soybean	cytosol, nucleus	19.93	49.19
CDY33620	Canola	cytosol	27.12	41.5
KRH01298	Soybean	cytosol, nucleus, plastid	14.38	39.64
TraesCS7D01G302500.1	Wheat	cytosol	24.84	26.57
TraesCS6D01G130400.3	Wheat	cytosol	26.47	18.08
TraesCS7D01G445900.2	Wheat	nucleus	25.82	17.67

Protein Annotations

EnsemblPlants:TraesCS4D01G074300.1	EnsemblPlantsGene:TraesCS4D01G074300	Gene3D:3.30.230.70	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408
InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	PFAM:PF01138	PFAM:PF03725
SUPFAM:SSF54211	SUPFAM:SSF55666	TIGR:cd11369	MapMan:16.8.1.1.4	:	:

Description

No Description!

Coordinates

chr4D:+:48714863..48718157

Molecular Weight (calculated)

32500.2 Da

IEP (calculated)

4.673

GRAVY (calculated)

0.091

Length

306 amino acids

Sequence
(BLAST)

001: MSAETDETAA GGLAGEMEVE AYRRLFPLAF LERHLRESVR PDARRLAEAR PTTVALGAVS SAHGSALVRL GDTAMLASIK LEVMSPPAET PDQGSVAVEF
101: HMPPICSPLV RPGRPAEAAP VISKALEDVL MSSGMLNLKE LCLISGKASW VAYLDVYCLN ADGSLFDAAL ISVVAAFTHL EIPLVSVGDD GRVFTVGGNE
201: GKTKYELVNR EKRKLTLGDI PFPLTCALHK DSILADPTAE EESIIETSVT VVLDSSGRLV SIQKPGGGVT SMATIKACIG LAKERGQKLK EILTDSVEAM
301: EVDQAE

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.