Factsheet for Solyc10g080130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075390.2.1	Tomato	nucleus	88.31	84.21
VIT_08s0007g08550.t01	Wine grape	cytosol	76.95	76.21
PGSC0003DMT400060984	Potato	golgi	80.84	75.68
KRH45053	Soybean	cytosol, nucleus	72.4	73.84
KRH16280	Soybean	nucleus	69.81	70.03
GSMUA_Achr7P02490_001	Banana	cytosol	65.26	69.55
KRH01295	Soybean	plastid	20.13	68.89
AT1G60080.1	Thale cress	cytosol	65.91	67.22
Bra027816.1-P	Field mustard	cytosol	65.26	66.78
CDY56983	Canola	cytosol	64.94	66.45
CDY63123	Canola	cytosol	64.94	66.45
KRH01293	Soybean	cytosol, nucleus	26.3	65.32
Os11t0311300-03	Rice	cytosol	57.79	58.17
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	57.79	58.17
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	57.79	58.17
TraesCS4D01G074300.1	Wheat	cytosol	57.47	57.84
EES15299	Sorghum	cytosol	56.17	56.54
Zm00001d044450_P001	Maize	cytosol	22.08	56.2
Zm00001d021033_P001	Maize	cytosol	25.65	55.63
Zm00001d049854_P001	Maize	cytosol	24.03	54.01
HORVU4Hr1G012650.14	Barley	cytosol	57.79	52.82
Zm00001d049855_P002	Maize	nucleus	34.42	49.07
Zm00001d031643_P001	Maize	cytosol	55.84	48.31
KRH01298	Soybean	cytosol, nucleus, plastid	16.56	45.95
CDY33620	Canola	cytosol	29.55	45.5
Solyc08g007520.2.1	Tomato	nucleus	24.35	22.73
Solyc05g047420.2.1	Tomato	nucleus	22.4	15.58

Protein Annotations

MapMan:16.8.1.1.4	Gene3D:3.30.230.70	ncoils:Coil	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
GO:GO:0000176	GO:GO:0000177	GO:GO:0000467	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0017091
GO:GO:0034427	GO:GO:0034473	GO:GO:0034475	GO:GO:0034476	GO:GO:0043928	GO:GO:0071028
GO:GO:0071035	GO:GO:0071038	GO:GO:0071042	InterPro:IPR027408	UniProt:K4D2Q4	PFAM:PF01138
PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211
SUPFAM:SSF55666	EnsemblPlantsGene:Solyc10g080130.1	EnsemblPlants:Solyc10g080130.1.1	UniParc:UPI000276932D	:	:

Description

No Description!

Coordinates

chr10:+:61518217..61522344

Molecular Weight (calculated)

33622.7 Da

IEP (calculated)

5.215

GRAVY (calculated)

0.104

Length

308 amino acids

Sequence
(BLAST)

001: MAAAYGSSDL SSEMEVDAFR RLFPLPYHEH HLLKSVRPDA RKLGSARYTT LALGAVASAD GSALAKIGST TMLAAIKMEV MTPTVECPDE GSIAIEFHMP
101: PICSPLVRHG RPAEAASVIS KQLFQVRERY FDCNSGMIDL KELCLVGGKA AWMAYLDIYC LDADGASFDT ALLSAVAAFL HLNIPVVSLN DDGRIVLVSE
201: DTVRLKLEKE PVNTEKRKLK LNSLPFSLTC ILHKNYILAD PTAEEESIME TIVTVVLDTS YQLVSLNKPG GPVLSHTSVI QDCVALARRR VKELQSVLNE
301: AISDMEVD

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.