Factsheet for PGSC0003DMT400060984

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 5
plasma membrane 5
plastid 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080130.1.1	Tomato	cytosol	75.68	80.84
PGSC0003DMT400019417	Potato	cytosol	72.95	79.21
KRH01295	Soybean	plastid	20.67	75.56
VIT_08s0007g08550.t01	Wine grape	cytosol	65.05	68.81
KRH45053	Soybean	cytosol, nucleus	62.31	67.88
GSMUA_Achr7P02490_001	Banana	cytosol	58.05	66.09
KRH16280	Soybean	nucleus	60.18	64.5
KRH01293	Soybean	cytosol, nucleus	24.01	63.71
AT1G60080.1	Thale cress	cytosol	58.05	63.24
Bra027816.1-P	Field mustard	cytosol	55.62	60.8
CDY56983	Canola	cytosol	55.62	60.8
CDY63123	Canola	cytosol	55.32	60.47
Os11t0311300-03	Rice	cytosol	49.24	52.94
TraesCS4D01G074300.1	Wheat	cytosol	49.24	52.94
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	49.24	52.94
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	49.24	52.94
EES15299	Sorghum	cytosol	48.63	52.29
Zm00001d049855_P002	Maize	nucleus	32.22	49.07
HORVU4Hr1G012650.14	Barley	cytosol	49.24	48.07
Zm00001d021033_P001	Maize	cytosol	19.76	45.77
CDY33620	Canola	cytosol	27.66	45.5
Zm00001d031643_P001	Maize	cytosol	48.33	44.66
Zm00001d049854_P001	Maize	cytosol	17.93	43.07
Zm00001d044450_P001	Maize	cytosol	15.5	42.15
KRH01298	Soybean	cytosol, nucleus, plastid	9.42	27.93
PGSC0003DMT400032572	Potato	cytosol	22.19	25.35

Protein Annotations

EntrezGene:102577517	MapMan:16.8.1.1.4	Gene3D:3.30.230.70	ncoils:Coil	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2
InterPro:ExoRNase_PH_dom2_sf	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR027408	UniProt:M1C6U0
PFAM:PF01138	PFAM:PF03725	EnsemblPlantsGene:PGSC0003DMG400023725	PGSC:PGSC0003DMG400023725	EnsemblPlants:PGSC0003DMT400060984	InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	TMHMM:TMhelix
UniParc:UPI0002953207	:	:	:	:	:

Description

3'-5'-exoribonuclease/RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023725]

Coordinates

chr10:-:57726522..57732940

Molecular Weight (calculated)

36264.6 Da

IEP (calculated)

4.533

GRAVY (calculated)

0.433

Length

329 amino acids

Sequence
(BLAST)

001: MAQVTCLQRW RWMHLDVFFL CAFMNIIFLN LSDLMPESLE VLEIQHLHLV WLIIISADQL LLYYLFSGVV QTYIYIFTAG AVASADGSAL AKIGSTTMLA
101: AIKMEVMTPI VECPDEGSIA IEFHMPPICS PLVRPGRPAE AASVISKQLS DTILSSGMID LKELCLVGGK AAWMAYLDIY CLDADGALFD TALLSAVAAF
201: SHLNIPVVSL NDDGRIVLVS EDTVRLKLEK EPVNTEKRKL KLNSLPFSLT CILHKNYILA DPTAEEESIM ETIVTMVLDS SYQLVSLNKP GGPVLSHTSV
301: IQDCIALARR RVKELQSVLN EAISDMEVD

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.