Factsheet for PGSC0003DMT400019417

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075390.2.1	Tomato	nucleus	98.68	92.57
VIT_08s0007g08550.t01	Wine grape	cytosol	79.54	77.49
KRH45053	Soybean	cytosol, nucleus	73.6	73.84
KRH01295	Soybean	plastid	21.78	73.33
PGSC0003DMT400060984	Potato	golgi	79.21	72.95
GSMUA_Achr7P02490_001	Banana	cytosol	68.65	71.97
KRH16280	Soybean	nucleus	71.95	71.01
AT1G60080.1	Thale cress	cytosol	68.32	68.54
Bra027816.1-P	Field mustard	cytosol	66.01	66.45
CDY56983	Canola	cytosol	65.68	66.11
CDY63123	Canola	cytosol	65.68	66.11
KRH01293	Soybean	cytosol, nucleus	26.07	63.71
Os11t0311300-03	Rice	cytosol	60.4	59.8
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	60.4	59.8
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	60.4	59.8
TraesCS4D01G074300.1	Wheat	cytosol	60.07	59.48
EES15299	Sorghum	cytosol	59.08	58.5
Zm00001d021033_P001	Maize	cytosol	26.73	57.04
Zm00001d044450_P001	Maize	cytosol	22.44	56.2
Zm00001d049854_P001	Maize	cytosol	25.08	55.47
HORVU4Hr1G012650.14	Barley	cytosol	60.4	54.3
Zm00001d049855_P002	Maize	nucleus	35.97	50.46
Zm00001d031643_P001	Maize	cytosol	58.42	49.72
KRH01298	Soybean	cytosol, nucleus, plastid	17.16	46.85
CDY33620	Canola	cytosol	29.04	44.0
PGSC0003DMT400032572	Potato	cytosol	25.41	26.74

Protein Annotations

EntrezGene:102577904	MapMan:16.8.1.1.4	Gene3D:3.30.230.70	ProteinID:ABC01901	ProteinID:ABC01901.1	ncoils:Coil
EMBL:DQ294269	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	InterPro:IPR027408	RefSeq:NP_001275445.1
PFAM:PF01138	PFAM:PF03725	EnsemblPlantsGene:PGSC0003DMG400007507	PGSC:PGSC0003DMG400007507	EnsemblPlants:PGSC0003DMT400019417	InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	UniProt:Q2PYX7	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI00006621C2	RefSeq:XP_006365747.1	:	:	:	:

Description

3'-5'-exoribonuclease/RNA binding [Source:PGSC_GENE;Acc:PGSC0003DMG400007507]

Coordinates

chr6:-:55944618..55949621

Molecular Weight (calculated)

32824.8 Da

IEP (calculated)

4.946

GRAVY (calculated)

0.093

Length

303 amino acids

Sequence
(BLAST)

001: MAAANGSSDL YSEMEVDAFR RLFPLRYHEQ HLLKSVRPDA RKLGSARDTT LALGAVASAE GSALAKIGST TMLAAIKMEI MTPTVECPDE GSIAIEFHMP
101: PICSPLVRPG RPAEVASVIS KQLSDTILSS GMIDLKELCL VGGKAAWMAY LDIYCLDADG SLFDAALLST VAAFSHLNIP VVSLNEDGRI VLVSEDNIQL
201: KLEKQPVNTE KRKLKLNSPP FSLTCLLHKN YILADPTAEE ESIMETAVTV VLDSSYQLVS LYKPGGPVHA HTSVIQDCVA LAKRRVKELQ SVLNEAISDM
301: EVE

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.