CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044450_P001	Maize	cytosol	30.63	28.1
Zm00001d049854_P001	Maize	cytosol	33.33	27.01
Zm00001d021033_P001	Maize	cytosol	32.43	25.35
KRH45053	Soybean	cytosol, nucleus	63.06	23.18
KRH16280	Soybean	nucleus	62.16	22.48
CDY63123	Canola	cytosol	51.35	18.94
Bra027816.1-P	Field mustard	cytosol	50.45	18.6
CDY56983	Canola	cytosol	50.45	18.6
VIT_08s0007g08550.t01	Wine grape	cytosol	50.45	18.01
AT1G60080.1	Thale cress	cytosol	48.65	17.88
PGSC0003DMT400019417	Potato	cytosol	46.85	17.16
Solyc10g080130.1.1	Tomato	cytosol	45.95	16.56
Solyc06g075390.2.1	Tomato	nucleus	46.85	16.1
GSMUA_Achr7P02490_001	Banana	cytosol	39.64	15.22
EES15299	Sorghum	cytosol	40.54	14.71
TraesCS4D01G074300.1	Wheat	cytosol	39.64	14.38
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	39.64	14.38
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	39.64	14.38
Os11t0311300-03	Rice	cytosol	38.74	14.05
HORVU4Hr1G012650.14	Barley	cytosol	39.64	13.06
Zm00001d031643_P001	Maize	cytosol	38.74	12.08
PGSC0003DMT400060984	Potato	golgi	27.93	9.42
Zm00001d049855_P002	Maize	nucleus	13.51	6.94
KRH01295	Soybean	plastid	5.41	6.67
KRH14064	Soybean	cytosol, nucleus, plastid	13.51	6.05
KRH70124	Soybean	endoplasmic reticulum, nucleus	15.32	5.94
KRH08468	Soybean	cytosol	15.32	5.94
KRH77682	Soybean	cytosol	18.02	4.58
KRH27808	Soybean	nucleus	17.12	4.04
CDY33620	Canola	cytosol	7.21	4.0
KRH44119	Soybean	plasma membrane	5.41	2.65
KRH01293	Soybean	cytosol, nucleus	1.8	1.61

Protein Annotations

Gene3D:3.30.230.70	MapMan:35.2	UniProt:A0A0R0FDB4	EMBL:ACUP02011511	EnsemblPlantsGene:GLYMA_18G267700	GO:GO:0000178
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0006401
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:IPR027408	EnsemblPlants:KRH01298
ProteinID:KRH01298	ProteinID:KRH01298.1	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold
SUPFAM:SSF54211	UniParc:UPI0006ED686A	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:55189880..55191241

Molecular Weight (calculated)

12622.1 Da

IEP (calculated)

5.125

GRAVY (calculated)

0.224

Length

111 amino acids

Sequence
(BLAST)

001: MGLPNVSEDL SSEVEVDAFK RIFPLRYFER HLAESIRADG RPLGKARETS IFLGAVAFAN GSALVKIGST VSHYSCVFFV KCRCEFRFLI FLWDGFNDFL
101: IDLCSDYVDC Y

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.