Factsheet for Os11t0311300-03

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	86.6	86.6
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	86.27	86.27
TraesCS4D01G074300.1	Wheat	cytosol	85.95	85.95
EES15299	Sorghum	cytosol	82.35	82.35
Zm00001d049854_P001	Maize	cytosol	35.62	79.56
Zm00001d044450_P001	Maize	cytosol	30.72	77.69
Zm00001d021033_P001	Maize	cytosol	35.95	77.46
HORVU4Hr1G012650.14	Barley	cytosol	85.29	77.45
Zm00001d031643_P001	Maize	cytosol	80.72	69.38
Zm00001d049855_P002	Maize	nucleus	47.39	67.13
GSMUA_Achr7P02490_001	Banana	cytosol	63.07	66.78
KRH01295	Soybean	plastid	18.63	63.33
PGSC0003DMT400019417	Potato	cytosol	59.8	60.4
Bra027816.1-P	Field mustard	cytosol	57.84	58.8
CDY63123	Canola	cytosol	57.84	58.8
AT1G60080.1	Thale cress	cytosol	57.84	58.61
CDY56983	Canola	cytosol	57.52	58.47
VIT_08s0007g08550.t01	Wine grape	cytosol	59.15	58.2
Solyc10g080130.1.1	Tomato	cytosol	58.17	57.79
Solyc06g075390.2.1	Tomato	nucleus	59.8	56.66
KRH16280	Soybean	nucleus	56.54	56.35
KRH45053	Soybean	cytosol, nucleus	54.9	55.63
PGSC0003DMT400060984	Potato	golgi	52.94	49.24
KRH01293	Soybean	cytosol, nucleus	19.28	47.58
CDY33620	Canola	cytosol	28.1	43.0
KRH01298	Soybean	cytosol, nucleus, plastid	14.05	38.74
Os12t0403800-02	Rice	cytosol	24.18	26.06
Os02t0550700-01	Rice	cytosol	26.14	20.25

Protein Annotations

MapMan:16.8.1.1.4	Gene3D:3.30.230.70	EntrezGene:4350355	ProteinID:ABG22460.1	EMBL:AK073252	EMBL:AK102900
UniProt:B7ELW5	ProteinID:BAT13732.1	ProteinID:EEE52027.1	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR027408
EnsemblPlantsGene:Os11g0311300	EnsemblPlants:Os11t0311300-03	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097
PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI0000D89A8B	RefSeq:XP_015615395.1
SEG:seg	:	:	:	:	:

Description

Exoribonuclease domain containing protein. (Os11t0311300-01);Similar to Exosome complex exonuclease RRP43. (Os11t0311300-02);Similar to Exosome complex exonuclease RRP43. (Os11t0311300-03);Similar to Exosome complex exonuclease RRP43. (Os11t0311300-04)

Coordinates

chr11:+:11980506..11988019

Molecular Weight (calculated)

32831.6 Da

IEP (calculated)

4.738

GRAVY (calculated)

0.053

Length

306 amino acids

Sequence
(BLAST)

001: MAAEAQATAA GGLAGEMEVE AYRRLFPLAF LERHLRESVR PDARRPAEAR PTTVALAAVS SAHGSALVRL GDTAMLASIK LEVMSPSGEA PDEGSIAVEF
101: HMPPICSPLV RPGRPAEVAP VISKNLEDIL MSSGMLNLKE LCLISGKASW LAYLDVYCLN ADGSLFDAAL ISAVAAFTHL EIPLVSVGDD GRVFTVGGNE
201: GKAKYELVNR EKRKLTITNV PFSLTCALHK DNVLADPTAE EESIIETSVT IVLDSSDQIV SIQKPGGAVT SMTTIKECIS LAKDRRRKLR EILMDNVEAM
301: EVDQTD

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.