Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63123 | Canola | cytosol | 88.74 | 89.04 |
| Bra027816.1-P | Field mustard | cytosol | 88.41 | 88.7 |
| CDY56983 | Canola | cytosol | 88.41 | 88.7 |
| KRH01295 | Soybean | plastid | 22.19 | 74.44 |
| KRH45053 | Soybean | cytosol, nucleus | 70.53 | 70.53 |
| KRH16280 | Soybean | nucleus | 70.53 | 69.38 |
| PGSC0003DMT400019417 | Potato | cytosol | 68.54 | 68.32 |
| VIT_08s0007g08550.t01 | Wine grape | cytosol | 69.54 | 67.52 |
| GSMUA_Achr7P02490_001 | Banana | cytosol | 63.58 | 66.44 |
| Solyc10g080130.1.1 | Tomato | cytosol | 67.22 | 65.91 |
| Solyc06g075390.2.1 | Tomato | nucleus | 69.54 | 65.02 |
| CDY33620 | Canola | cytosol | 40.4 | 61.0 |
| PGSC0003DMT400060984 | Potato | golgi | 63.24 | 58.05 |
| TraesCS4A01G239300.1 | Wheat | cytosol, nucleus, plastid | 58.61 | 57.84 |
| Os11t0311300-03 | Rice | cytosol | 58.61 | 57.84 |
| TraesCS4D01G074300.1 | Wheat | cytosol | 58.28 | 57.52 |
| TraesCS4B01G075600.1 | Wheat | cytosol, nucleus, plastid | 57.95 | 57.19 |
| KRH01293 | Soybean | cytosol, nucleus | 23.18 | 56.45 |
| Zm00001d021033_P001 | Maize | cytosol | 26.16 | 55.63 |
| EES15299 | Sorghum | cytosol | 56.29 | 55.56 |
| Zm00001d049854_P001 | Maize | cytosol | 24.83 | 54.74 |
| Zm00001d044450_P001 | Maize | cytosol | 21.85 | 54.55 |
| HORVU4Hr1G012650.14 | Barley | cytosol | 58.28 | 52.23 |
| KRH01298 | Soybean | cytosol, nucleus, plastid | 17.88 | 48.65 |
| Zm00001d049855_P002 | Maize | nucleus | 34.44 | 48.15 |
| Zm00001d031643_P001 | Maize | cytosol | 56.62 | 48.03 |
| AT3G07750.2 | Thale cress | cytosol | 24.17 | 25.52 |
| AT3G12990.1 | Thale cress | cytosol | 24.5 | 24.1 |
| AT3G60500.1 | Thale cress | cytosol | 24.5 | 16.89 |
Protein Annotations
| MapMan:16.8.1.1.4 | Gene3D:3.30.230.70 | EntrezGene:842303 | UniProt:A0A178WDS9 | ProteinID:AAD14485.1 | ProteinID:AEE33657.1 |
| EMBL:AK227971 | ArrayExpress:AT1G60080 | EnsemblPlantsGene:AT1G60080 | RefSeq:AT1G60080 | TAIR:AT1G60080 | RefSeq:AT1G60080-TAIR-G |
| EnsemblPlants:AT1G60080.1 | TAIR:AT1G60080.1 | Unigene:At.36723 | EMBL:BT004614 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 |
| InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000467 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0017091 | GO:GO:0034427 | GO:GO:0034473 | GO:GO:0034475 | GO:GO:0034476 |
| GO:GO:0043928 | GO:GO:0071028 | GO:GO:0071035 | GO:GO:0071038 | GO:GO:0071042 | InterPro:IPR027408 |
| RefSeq:NP_176216.1 | ProteinID:OAP16569.1 | PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF20 | UniProt:Q9ZUI4 | InterPro:Ribosomal_S5_D2-typ_fold |
| SUPFAM:SSF54211 | SUPFAM:SSF55666 | UniParc:UPI000000C3E2 | SEG:seg | : | : |
Description
3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
Coordinates
chr1:-:22152230..22154643
Molecular Weight (calculated)
32700.6 Da
IEP (calculated)
4.699
GRAVY (calculated)
0.051
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.