Factsheet for GSMUA_Achr7P02490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01295	Soybean	plastid	23.88	76.67
VIT_08s0007g08550.t01	Wine grape	cytosol	74.74	69.45
PGSC0003DMT400019417	Potato	cytosol	71.97	68.65
KRH45053	Soybean	cytosol, nucleus	70.59	67.55
KRH16280	Soybean	nucleus	70.93	66.78
Solyc10g080130.1.1	Tomato	cytosol	69.55	65.26
Solyc06g075390.2.1	Tomato	nucleus	71.97	64.4
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	68.17	64.38
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	68.17	64.38
TraesCS4D01G074300.1	Wheat	cytosol	67.82	64.05
AT1G60080.1	Thale cress	cytosol	66.44	63.58
Os11t0311300-03	Rice	cytosol	66.78	63.07
Bra027816.1-P	Field mustard	cytosol	65.4	62.79
CDY63123	Canola	cytosol	65.4	62.79
CDY56983	Canola	cytosol	65.05	62.46
EES15299	Sorghum	cytosol	65.74	62.09
Zm00001d049854_P001	Maize	cytosol	28.03	59.12
KRH01293	Soybean	cytosol, nucleus	25.26	58.87
PGSC0003DMT400060984	Potato	golgi	66.09	58.05
HORVU4Hr1G012650.14	Barley	cytosol	67.13	57.57
Zm00001d021033_P001	Maize	cytosol	28.03	57.04
Zm00001d044450_P001	Maize	cytosol	23.53	56.2
Zm00001d049855_P002	Maize	nucleus	39.79	53.24
Zm00001d031643_P001	Maize	cytosol	64.01	51.97
CDY33620	Canola	cytosol	30.45	44.0
KRH01298	Soybean	cytosol, nucleus, plastid	15.22	39.64
GSMUA_Achr4P23580_001	Banana	cytosol	25.95	24.83
GSMUA_Achr8P16380_001	Banana	cytosol	22.84	18.03
GSMUA_Achr6P25490_001	Banana	cytosol	22.15	15.88

Protein Annotations

MapMan:16.8.1.1.4	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	EnsemblPlantsGene:GSMUA_Achr7G02490_001	EnsemblPlants:GSMUA_Achr7P02490_001
EnsemblPlants:GSMUA_Achr7T02490_001	InterPro:IPR027408	UniProt:M0TE39	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf
PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	InterPro:Ribosomal_S5_D2-typ_fold	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000294CDE8

Description

Putative Exosome complex exonuclease RRP43 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02490_001]

Coordinates

chr7:-:1970034..1975492

Molecular Weight (calculated)

31413.3 Da

IEP (calculated)

4.837

GRAVY (calculated)

0.191

Length

289 amino acids

Sequence
(BLAST)

001: MEVEAYRRLF PLPFYERHLL DSVRPDARPL HRARDTSIAL GPVASADGSA LVKIGDTTML AAIKLEVMTP SADAPDEGSL AIEFHMPPIC SPIVRPGRPA
101: EVAPVVSKQL SDVIMSSGMI NLKELSLITG KAAWMAYLDI YCLNADGSLF DAALLSAIAA FSHLQIPLVS LSDDGRVVAV SGDLLEDEST PELVNKERKL
201: LLHSIPFSLT CILHKKYILA DPTAEEESIM ETSITVVLDS SERLVSIYKP GGPVLAHTST VKDCIVLTKH RMKELQNILE ESLSAMEVV

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.