Factsheet for GSMUA_Achr6P25490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60500.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045898_P001	Maize	cytosol, extracellular	27.79	73.2
GSMUA_Achr8P16380_001	Banana	cytosol	64.76	71.31
AT3G12990.1	Thale cress	cytosol	49.13	64.5
CDY70752	Canola	cytosol	52.36	59.94
TraesCS7A01G457300.1	Wheat	cytosol	55.58	56.0
Os02t0550700-01	Rice	cytosol	54.59	55.7
TraesCS6D01G130400.3	Wheat	cytosol	60.3	54.24
HORVU6Hr1G027570.6	Barley	cytosol	60.05	54.02
Solyc05g047420.2.1	Tomato	nucleus	59.31	53.95
TraesCS6A01G141100.2	Wheat	cytosol	59.8	53.79
TraesCS7D01G445900.2	Wheat	nucleus	59.55	53.69
TraesCS7B01G358800.3	Wheat	nucleus	59.55	53.57
TraesCS6B01G169200.2	Wheat	cytosol	59.55	53.57
HORVU7Hr1G105370.12	Barley	nucleus	59.55	53.57
Zm00001d036997_P001	Maize	cytosol	35.73	53.53
Zm00001d002336_P001	Maize	cytosol	23.08	52.84
Zm00001d016770_P002	Maize	nucleus	58.31	52.69
KXG30375	Sorghum	nucleus	58.56	52.56
CDX98419	Canola	nucleus	51.86	50.85
CDX67830	Canola	nucleus	51.86	50.85
Bra003416.1-P	Field mustard	nucleus	51.86	50.85
AT3G60500.1	Thale cress	cytosol	54.84	50.46
CDY41161	Canola	cytosol	54.34	50.23
Bra007540.1-P	Field mustard	nucleus	53.85	49.77
CDX71803	Canola	nucleus	53.85	49.32
Zm00001d042612_P001	Maize	plastid	30.52	48.81
KRH77682	Soybean	cytosol	52.61	48.51
VIT_18s0072g00880.t01	Wine grape	nucleus	44.91	47.88
KRH27808	Soybean	nucleus	52.61	45.11
Zm00001d033842_P001	Maize	cytosol	30.52	39.17
GSMUA_Achr4P23580_001	Banana	cytosol	21.09	28.15
GSMUA_Achr7P02490_001	Banana	cytosol	15.88	22.15

Protein Annotations

MapMan:16.8.1.1.5	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf	GO:GO:0000178
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G25490_001	EnsemblPlants:GSMUA_Achr6P25490_001	EnsemblPlants:GSMUA_Achr6T25490_001	InterPro:IPR027408
UniProt:M0TA45	PFAM:PF01138	PFAM:PF03725	InterPro:PNPase/RNase_PH_dom_sf	PANTHER:PTHR11097	PANTHER:PTHR11097:SF21
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Rrp45	SUPFAM:SSF54211	SUPFAM:SSF55666	UniParc:UPI000295E85B	:

Description

Putative Exosome complex component rrp45 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25490_001]

Coordinates

chr6:-:26573113..26577613

Molecular Weight (calculated)

44864.0 Da

IEP (calculated)

6.020

GRAVY (calculated)

-0.155

Length

403 amino acids

Sequence
(BLAST)

001: MEQRLANTWR MTNNEKKFIE SVLASDLRVD GRRPFDYRDL TIKFGRHVEQ GLSEVQLGQT RVMSYVTSQL VQPYRDRPNE GTLSIFTEFS PMADPSFEAG
101: RPGEFAVELG RVIDRGLRES SAMDMESLCV VVGKSVWSIR VDLHIVDNGG NLIDAANIAA LVALLTFRRP DCTLGGDDGQ ELIMHDAEVR EPLPLIIHHL
201: PIAVTFAVFG EGNIMVIDPT HKEEMVMGGK MTFTMNSNGD ICAVQKAGGV GVMSSIIMQC LQIASAKAAD ITSKIKHAVE IYNTERASQK ANHYLLEVAN
301: QVSLSDVIMK EKQVENLIEH LAYMPLDELE NSNQGDALAV DTRTKHESIS QGRYTRAFVR GPANWDPYSR GISSRLATSF PTLPDFSLVR FIICIRNSIK
401: LKM

Best Arabidopsis Sequence Match ( AT3G60500.1 )
(BLAST)

001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS

Arabidopsis Description

RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.