Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT3G60500.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 33.5 | 87.58 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 84.75 | 75.84 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 83.75 | 74.78 |
| Os02t0550700-01 | Rice | cytosol | 73.75 | 74.68 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 83.0 | 74.11 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 79.5 | 70.98 |
| Zm00001d002336_P001 | Maize | cytosol | 28.75 | 65.34 |
| KXG30375 | Sorghum | nucleus | 72.5 | 64.59 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 58.75 | 64.21 |
| AT3G12990.1 | Thale cress | cytosol | 49.25 | 64.17 |
| Zm00001d016770_P002 | Maize | nucleus | 71.5 | 64.13 |
| Zm00001d036997_P001 | Maize | cytosol | 40.75 | 60.59 |
| CDY70752 | Canola | cytosol | 51.75 | 58.81 |
| Zm00001d042612_P001 | Maize | plastid | 36.25 | 57.54 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 56.0 | 55.58 |
| Bra003416.1-P | Field mustard | nucleus | 55.25 | 53.77 |
| CDX67830 | Canola | nucleus | 55.25 | 53.77 |
| CDX98419 | Canola | nucleus | 55.0 | 53.53 |
| Solyc05g047420.2.1 | Tomato | nucleus | 58.0 | 52.37 |
| AT3G60500.1 | Thale cress | cytosol | 55.75 | 50.91 |
| Bra007540.1-P | Field mustard | nucleus | 54.5 | 50.0 |
| CDY41161 | Canola | cytosol | 54.0 | 49.54 |
| CDX71803 | Canola | nucleus | 53.5 | 48.64 |
| KRH77682 | Soybean | cytosol | 51.5 | 47.14 |
| VIT_18s0072g00880.t01 | Wine grape | nucleus | 44.25 | 46.83 |
| Zm00001d033842_P001 | Maize | cytosol | 36.5 | 46.5 |
| KRH27808 | Soybean | nucleus | 50.0 | 42.55 |
| TraesCS7A01G305800.1 | Wheat | cytosol | 22.0 | 30.77 |
| TraesCS4A01G239300.1 | Wheat | cytosol, nucleus, plastid | 19.75 | 25.82 |
Protein Annotations
| MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | GO:GO:0000178 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR027408 | PFAM:PF01138 | PFAM:PF03725 | InterPro:PNPase/RNase_PH_dom_sf |
| PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Rrp45 | SUPFAM:SSF54211 | SUPFAM:SSF55666 |
| EnsemblPlantsGene:TraesCS7A01G457300 | EnsemblPlants:TraesCS7A01G457300.1 | TIGR:cd11368 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:-:652718317..652721975
Molecular Weight (calculated)
43741.0 Da
IEP (calculated)
5.361
GRAVY (calculated)
-0.409
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDQRWRPTV NEREFIEQAL QSDLRVDGRR PFDFRPFDFR KLTISFGRED GSAEVLLGET CVMGYVTAQL VPPYKDRPNE GTLAIFTEFS PMADPAFEPG
101: RPGEAAIELG RVIDRGLRES RAVDMESLCV VAGKHVWAVR VDLHILDNGG NLIDAANIAA LAALSTFRRP ECTVGGDDGQ QVTVHDPEVM DPLPLTIHHL
201: PIAVTFAYFG DGNIMVIDPT YKEEAVMGGR MTATVNSNGD VCAIQKAGGE GVMSSVIMQC LRIASVKAAD ITSKIKTKVD KYTTDKALQK VKRTPAIVAK
301: EVNVPDVAMK ESMHSAMENQ TSKAPNDDQQ ISEDSPAVAN DKKHEDVEPV LIESNPEVKS VSNSGSAGES DEVKESRSPE SLVDAVKPKH KRKKKQHGKS
101: RPGEAAIELG RVIDRGLRES RAVDMESLCV VAGKHVWAVR VDLHILDNGG NLIDAANIAA LAALSTFRRP ECTVGGDDGQ QVTVHDPEVM DPLPLTIHHL
201: PIAVTFAYFG DGNIMVIDPT YKEEAVMGGR MTATVNSNGD VCAIQKAGGE GVMSSVIMQC LRIASVKAAD ITSKIKTKVD KYTTDKALQK VKRTPAIVAK
301: EVNVPDVAMK ESMHSAMENQ TSKAPNDDQQ ISEDSPAVAN DKKHEDVEPV LIESNPEVKS VSNSGSAGES DEVKESRSPE SLVDAVKPKH KRKKKQHGKS
001: MEGRLNNMWR LTVNESKFVE SALQSELRVD GRGLYDYRKL TIKFGKEYGS SQVQLGQTHV MAFVTAQLVQ PYKDRPSEGS FSIFTEFSPM ADPSFEPGHP
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
101: GESAVELGRI IDRALRESRA VDTESLCVLA GKLVWSVRID LHILDNGGNL VDAANVAALA ALMTFRRPDC TVGGDNSQDV IIHPPEEREP LPLIIHHLPI
201: AFTFGFFNKG SILVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRASATT KIIRDAVEAY NRERSSQKVK RHHTLAKSEV
301: LGPIVVV
Arabidopsis Description
RRP45AExosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.