Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g00430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60500.1 | VIT_19s0015g00430.t01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045898_P001 | Maize | cytosol, extracellular | 29.89 | 73.86 |
| Zm00001d036997_P001 | Maize | cytosol | 39.95 | 56.13 |
| Solyc05g047420.2.1 | Tomato | nucleus | 61.64 | 52.6 |
| Zm00001d002336_P001 | Maize | cytosol | 24.07 | 51.7 |
| GSMUA_Achr8P16380_001 | Banana | cytosol | 48.94 | 50.55 |
| AT3G12990.1 | Thale cress | cytosol | 38.36 | 47.23 |
| Os02t0550700-01 | Rice | cytosol | 47.88 | 45.82 |
| CDY70752 | Canola | cytosol | 42.59 | 45.74 |
| AT3G60500.1 | Thale cress | cytosol | 52.65 | 45.43 |
| Zm00001d042612_P001 | Maize | plastid | 30.16 | 45.24 |
| Bra007540.1-P | Field mustard | nucleus | 51.85 | 44.95 |
| GSMUA_Achr6P25490_001 | Banana | cytosol | 47.88 | 44.91 |
| HORVU7Hr1G105370.12 | Barley | nucleus | 53.17 | 44.87 |
| CDY41161 | Canola | cytosol | 51.59 | 44.72 |
| Zm00001d016770_P002 | Maize | nucleus | 52.38 | 44.39 |
| CDX71803 | Canola | nucleus | 51.59 | 44.32 |
| TraesCS7A01G457300.1 | Wheat | cytosol | 46.83 | 44.25 |
| TraesCS7B01G358800.3 | Wheat | nucleus | 52.38 | 44.2 |
| TraesCS6A01G141100.2 | Wheat | cytosol | 52.12 | 43.97 |
| TraesCS6B01G169200.2 | Wheat | cytosol | 52.12 | 43.97 |
| TraesCS7D01G445900.2 | Wheat | nucleus | 51.85 | 43.85 |
| TraesCS6D01G130400.3 | Wheat | cytosol | 51.85 | 43.75 |
| HORVU6Hr1G027570.6 | Barley | cytosol | 51.85 | 43.75 |
| KXG30375 | Sorghum | nucleus | 51.59 | 43.43 |
| KRH77682 | Soybean | cytosol | 49.47 | 42.79 |
| CDX67830 | Canola | nucleus | 46.3 | 42.58 |
| Bra003416.1-P | Field mustard | nucleus | 46.3 | 42.58 |
| CDX98419 | Canola | nucleus | 46.3 | 42.58 |
| Zm00001d033842_P001 | Maize | cytosol | 34.39 | 41.4 |
| KRH27808 | Soybean | nucleus | 48.94 | 39.36 |
| VIT_04s0008g06260.t01 | Wine grape | cytosol | 14.81 | 19.51 |
| VIT_08s0007g08550.t01 | Wine grape | cytosol | 12.96 | 15.76 |
Protein Annotations
| EntrezGene:100265860 | wikigene:100265860 | MapMan:16.8.1.1.5 | Gene3D:3.30.230.70 | EMBL:AM452744 | ProteinID:CAN74356 |
| ProteinID:CAN74356.1 | ProteinID:CCB44853 | ProteinID:CCB44853.1 | InterPro:ExoRNase_PH_dom1 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf |
| UniProt:F6GY15 | EMBL:FN594968 | GO:GO:0000176 | GO:GO:0000177 | GO:GO:0000178 | GO:GO:0000467 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0017091 | GO:GO:0034427 | GO:GO:0034473 |
| GO:GO:0034475 | GO:GO:0034476 | GO:GO:0043928 | GO:GO:0071028 | GO:GO:0071035 | GO:GO:0071038 |
| GO:GO:0071042 | InterPro:IPR027408 | EntrezGene:LOC100265860 | wikigene:LOC100265860 | PFAM:PF01138 | PFAM:PF03725 |
| InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF21 | InterPro:Ribosomal_S5_D2-typ_fold | SUPFAM:SSF54211 | SUPFAM:SSF55666 |
| UniParc:UPI00021080DC | ArrayExpress:VIT_18s0072g00880 | EnsemblPlantsGene:VIT_18s0072g00880 | EnsemblPlants:VIT_18s0072g00880.t01 | unigene:Vvi.14165 | RefSeq:XP_002270464 |
| RefSeq:XP_002270464.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:20255685..20261710
Molecular Weight (calculated)
40975.9 Da
IEP (calculated)
7.000
GRAVY (calculated)
-0.445
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPSFEAGR PGEAAVELGR VIDRGLRESR AVDMESLCVL AGKLVWSIRI DLHIIDNGGN LIDAANIAAL AALLTFRRPE CSFGGEDGQE LIVHPPEVRE
101: PLPLIVHHLP IAVTFAIIGN ENIMVIDPTH SEEAVMGGRM TATLNTNGDV CAIQKAGGEG IIQSVIMQCL RIASVKAADI TSKIKNAVEA FNTERALRKI
201: KRHSSSIAVD VSGPGAKMRE NKNQSVDEKV VNELSSHHME RLKMESEESC VTQSSDVEVK TQLSEQGRTN RSDENTRSFI GGPSSWDPYS KGIDSDFLKA
301: SLASHGLIKQ NTKQKDSRGE MKAPDVKSEE PNADIDPALC PMKTVGTTPQ TNGEKTLKDA VKPKNKRKKK ASPNTNAR
101: PLPLIVHHLP IAVTFAIIGN ENIMVIDPTH SEEAVMGGRM TATLNTNGDV CAIQKAGGEG IIQSVIMQCL RIASVKAADI TSKIKNAVEA FNTERALRKI
201: KRHSSSIAVD VSGPGAKMRE NKNQSVDEKV VNELSSHHME RLKMESEESC VTQSSDVEVK TQLSEQGRTN RSDENTRSFI GGPSSWDPYS KGIDSDFLKA
301: SLASHGLIKQ NTKQKDSRGE MKAPDVKSEE PNADIDPALC PMKTVGTTPQ TNGEKTLKDA VKPKNKRKKK ASPNTNAR
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
Arabidopsis Description
RRP45BExosome complex component RRP45B [Source:UniProtKB/Swiss-Prot;Acc:Q9M209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.