Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 30.05 | 51.72 |
| CDX94304 | Canola | nucleus | 37.4 | 51.26 |
| Solyc10g006000.2.1 | Tomato | nucleus | 43.07 | 46.57 |
| Solyc07g065490.2.1 | Tomato | nucleus | 47.41 | 44.8 |
| KRG98507 | Soybean | nucleus | 53.59 | 43.67 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 48.25 | 42.31 |
| KRH46360 | Soybean | nucleus | 51.09 | 41.35 |
| KRG98502 | Soybean | nucleus | 48.25 | 39.59 |
| AT4G26630.1 | Thale cress | nucleus | 50.25 | 39.45 |
| KRH46364 | Soybean | nucleus | 51.92 | 38.54 |
| CDY06563 | Canola | nucleus | 43.24 | 37.7 |
| AT5G55660.1 | Thale cress | nucleus | 48.58 | 37.4 |
| CDX89318 | Canola | nucleus | 43.24 | 36.79 |
| CDY28645 | Canola | nucleus | 46.08 | 34.8 |
| Bra026415.1-P | Field mustard | nucleus | 47.41 | 34.01 |
| CDY20754 | Canola | nucleus | 44.07 | 33.25 |
| Bra035582.1-P | Field mustard | nucleus | 44.07 | 33.25 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 31.39 | 32.98 |
| CDY17352 | Canola | extracellular, vacuole | 45.41 | 32.85 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 46.08 | 31.91 |
| EER91265 | Sorghum | nucleus | 31.22 | 28.99 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 15.36 | 28.66 |
| Zm00001d013757_P010 | Maize | nucleus | 30.55 | 28.02 |
| Os03t0596900-01 | Rice | nucleus | 31.55 | 26.88 |
| Zm00001d033159_P001 | Maize | nucleus | 20.03 | 26.85 |
| CDX97358 | Canola | nucleus | 46.91 | 23.17 |
| Bra010432.1-P | Field mustard | nucleus | 43.57 | 23.08 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 29.55 | 18.21 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 29.72 | 17.76 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 29.38 | 17.76 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 28.88 | 17.69 |
| OQU91413 | Sorghum | nucleus | 26.21 | 11.62 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100249691 | wikigene:100249691 | MapMan:35.2 | ProteinID:CCB62005 | ProteinID:CCB62005.1 |
| ncoils:Coil | InterPro:DEK_C | UniProt:F6I550 | EMBL:FN596747 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0042393 | GO:GO:0043565 | GO:GO:0046982 | GO:GO:2000779 | EntrezGene:LOC100249691 | wikigene:LOC100249691 |
| PFAM:PF08766 | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | SUPFAM:SSF109715 | TIGR:TC54902 | UniParc:UPI000198579A |
| ArrayExpress:VIT_19s0015g00430 | EnsemblPlantsGene:VIT_19s0015g00430 | EnsemblPlants:VIT_19s0015g00430.t01 | unigene:Vvi.5061 | RefSeq:XP_002266659 | RefSeq:XP_002266659.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:8443524..8455022
Molecular Weight (calculated)
67758.8 Da
IEP (calculated)
5.270
GRAVY (calculated)
-1.348
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDETEVVAA AENGNGTTLP EKMESVMEKK EEENNGVKEM EEDSKGDEKV ETEALEAEKM DEDLAAKEEK ENKELEEKEE PKTEVMEEDN VSKENEASEE
101: KVESKENVEE KVDGSKEKEK GGEIKDGKGP RKRGKGRSSG ERVKDKVKEV EEKKVKEPRT PAASTIARPV RERKSVERLV ASIERDSTKE FHIEKGRGTA
201: LKDIPNVAYK LSKRKSDDTF KLLHTILFGR RGKAFQVKNN ISRFSGFVWH ENEEKQKIKV KEKFDKCVKE KLLEFCDVLD ISIAKTTTRK EDIVTKLIEF
301: LVAPHPTTTV LLAEKEQSIK GKKRKRVVKR NSSMSGSTSS KRSAKSRRKT EDTDTMEEKK SIHDSEDDSE EEDDKNEEEE NENGIPERSE DEISEHSESE
401: EKGNESEDES EEEIVKRKRD SKKTPVKKES AGKAKTKKTP TPKKSISPPK RSKKLSSNRS KADDDSDTSP KVFSRKKKNE VAKGRSSTPK KSVSKEKPGK
501: KAVKGKDKPK EDKSSPSDDE LRNAICEILK EVDFNTATFT DILKQLARQF ETDLTARKSS IKLIIQEELT KLADEVDDED EEGDAEKDEA QPASQEVEA
101: KVESKENVEE KVDGSKEKEK GGEIKDGKGP RKRGKGRSSG ERVKDKVKEV EEKKVKEPRT PAASTIARPV RERKSVERLV ASIERDSTKE FHIEKGRGTA
201: LKDIPNVAYK LSKRKSDDTF KLLHTILFGR RGKAFQVKNN ISRFSGFVWH ENEEKQKIKV KEKFDKCVKE KLLEFCDVLD ISIAKTTTRK EDIVTKLIEF
301: LVAPHPTTTV LLAEKEQSIK GKKRKRVVKR NSSMSGSTSS KRSAKSRRKT EDTDTMEEKK SIHDSEDDSE EEDDKNEEEE NENGIPERSE DEISEHSESE
401: EKGNESEDES EEEIVKRKRD SKKTPVKKES AGKAKTKKTP TPKKSISPPK RSKKLSSNRS KADDDSDTSP KVFSRKKKNE VAKGRSSTPK KSVSKEKPGK
501: KAVKGKDKPK EDKSSPSDDE LRNAICEILK EVDFNTATFT DILKQLARQF ETDLTARKSS IKLIIQEELT KLADEVDDED EEGDAEKDEA QPASQEVEA
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.