Factsheet for VIT_01s0011g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34553	Canola	nucleus	28.8	44.35
KRH50534	Soybean	nucleus	24.08	38.66
KRG89504	Soybean	cytosol, mitochondrion, nucleus	25.13	38.4
Bra016718.1-P	Field mustard	nucleus	21.47	37.27
CDY34552	Canola	nucleus	24.61	36.72
AT1G13930.1	Thale cress	nucleus	29.32	36.13
Bra016719.1-P	Field mustard	nucleus	29.32	35.9
Bra026551.1-P	Field mustard	nucleus	29.84	34.13
Bra024775.1-P	Field mustard	nucleus	30.89	33.33
CDY02995	Canola	nucleus	30.89	33.33
CDY45164	Canola	nucleus	30.89	33.33
AT2G03440.1	Thale cress	nucleus	32.46	33.16
CDY37195	Canola	nucleus	29.32	32.56
CDX96875	Canola	nucleus	21.47	32.54
EES02656	Sorghum	cytosol	25.65	30.82
HORVU3Hr1G030150.1	Barley	nucleus	25.13	30.57
TraesCS3B01G175900.1	Wheat	nucleus	24.61	29.75
TraesCS3D01G156500.1	Wheat	nucleus	24.61	29.75
Zm00001d008397_P001	Maize	extracellular	25.65	29.7
TraesCS3A01G148700.1	Wheat	nucleus	24.08	29.49
CDY53944	Canola	cytosol	21.47	27.7
Os10t0330000-01	Rice	plasma membrane	23.56	27.27
TraesCS4A01G052500.1	Wheat	nucleus	31.41	20.27
TraesCS4D01G251800.1	Wheat	nucleus	31.94	18.71
TraesCS4B01G251800.2	Wheat	nucleus	30.89	17.2
OQU93026	Sorghum	nucleus	34.55	15.83
Zm00001d028024_P001	Maize	extracellular	33.51	14.65
Solyc05g012570.2.1	Tomato	nucleus	30.37	14.5
PGSC0003DMT400072972	Potato	cytosol	29.32	10.16
Os03t0210600-01	Rice	plasma membrane	14.14	9.0

Protein Annotations

ArrayExpress:VIT_01s0011g00830	EMBL:AM470404	EMBL:FN595752	EnsemblPlants:VIT_01s0011g00830.t01	EnsemblPlantsGene:VIT_01s0011g00830	EntrezGene:100262861
EntrezGene:LOC100262861	PANTHER:PTHR35098	PANTHER:PTHR35098:SF1	ProteinID:CAN63832	ProteinID:CAN63832.1	ProteinID:CCB51057
ProteinID:CCB51057.1	RefSeq:XP_002271911	RefSeq:XP_002271911.1	SEG:seg	TIGR:TC54010	UniParc:UPI00021081D6
UniProt:F6HF70	wikigene:100262861	wikigene:LOC100262861	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1:-:729283..731611

Molecular Weight (calculated)

20416.4 Da

IEP (calculated)

7.156

GRAVY (calculated)

-0.773

Length

191 amino acids

Sequence
(BLAST)

001: MMMVKQHGHD TVKEASPPHI STGEGGVKAS SPLFDPSLCK TSSEFLSFQT SMDPTSHHRP GSHPQKHHQP SSSELLSSAK VVAEAAQASF HHESEKVDKS
101: RVAGAAADIL GAASHYGKLE EKSFGKYVEK AETYLHQYQS SHSTTTTINS GHSTTNTTET HSSSHSGGGD SHSGGGYGDY LKMAEGFLKK Y

Best Arabidopsis Sequence Match ( AT2G03440.1 )
(BLAST)

001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK

Arabidopsis Description

NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.