Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G175900.1 | Wheat | nucleus | 97.47 | 97.47 |
| TraesCS3A01G148700.1 | Wheat | nucleus | 95.57 | 96.79 |
| HORVU3Hr1G030150.1 | Barley | nucleus | 91.14 | 91.72 |
| Os10t0330000-01 | Rice | plasma membrane | 57.59 | 55.15 |
| Zm00001d008397_P001 | Maize | extracellular | 55.7 | 53.33 |
| EES02656 | Sorghum | cytosol | 48.73 | 48.43 |
| CDY34553 | Canola | nucleus | 32.91 | 41.94 |
| Bra016718.1-P | Field mustard | nucleus | 25.95 | 37.27 |
| KRH50534 | Soybean | nucleus | 27.22 | 36.13 |
| Bra016719.1-P | Field mustard | nucleus | 35.44 | 35.9 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 27.22 | 34.4 |
| AT1G13930.1 | Thale cress | nucleus | 32.91 | 33.55 |
| CDX96875 | Canola | nucleus | 26.58 | 33.33 |
| CDY34552 | Canola | nucleus | 25.32 | 31.25 |
| Bra026551.1-P | Field mustard | nucleus | 32.28 | 30.54 |
| CDY37195 | Canola | nucleus | 31.65 | 29.07 |
| CDY53944 | Canola | cytosol | 27.22 | 29.05 |
| CDY45164 | Canola | nucleus | 32.28 | 28.81 |
| CDY02995 | Canola | nucleus | 32.28 | 28.81 |
| Bra024775.1-P | Field mustard | nucleus | 32.28 | 28.81 |
| AT2G03440.1 | Thale cress | nucleus | 31.65 | 26.74 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 29.75 | 24.61 |
| TraesCS4D01G251800.1 | Wheat | nucleus | 30.38 | 14.72 |
| Solyc05g012570.2.1 | Tomato | nucleus | 29.11 | 11.5 |
| PGSC0003DMT400072972 | Potato | cytosol | 26.58 | 7.62 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G156500.1 | EnsemblPlantsGene:TraesCS3D01G156500 | PANTHER:PTHR35098 | PANTHER:PTHR35098:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3D:-:123908792..123909268
Molecular Weight (calculated)
16261.8 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.782
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEKNSSGD LMSSSKLVAE AAKTAYEKKS VEGIDKEKVA AASADILDSA AKYGKLEDKP VGQYLEKAEG YLKQYSSGGT EKEKTDAPAA ADAPKPDAPK
101: EAAPAPAPAA EEEKSSDGFG LDDVMKGAAS LSGKKSGEEE KESGGGGGFM KMAQGFMK
101: EAAPAPAPAA EEEKSSDGFG LDDVMKGAAS LSGKKSGEEE KESGGGGGFM KMAQGFMK
001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
Arabidopsis Description
NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.