Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G052500.1 | Wheat | nucleus | 88.34 | 97.3 |
| TraesCS4B01G251800.2 | Wheat | nucleus | 67.48 | 64.14 |
| OQU93026 | Sorghum | nucleus | 68.71 | 53.72 |
| Zm00001d028024_P001 | Maize | extracellular | 67.79 | 50.57 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 17.79 | 46.4 |
| KRH50534 | Soybean | nucleus | 15.95 | 43.7 |
| Os03t0210600-01 | Rice | plasma membrane | 37.42 | 40.67 |
| CDY34553 | Canola | nucleus | 14.72 | 38.71 |
| Bra026551.1-P | Field mustard | nucleus | 16.87 | 32.93 |
| CDY37195 | Canola | nucleus | 17.18 | 32.56 |
| Bra016719.1-P | Field mustard | nucleus | 15.34 | 32.05 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 18.71 | 31.94 |
| CDY45164 | Canola | nucleus | 17.18 | 31.64 |
| Bra024775.1-P | Field mustard | nucleus | 16.87 | 31.07 |
| CDY02995 | Canola | nucleus | 16.87 | 31.07 |
| AT2G03440.1 | Thale cress | nucleus | 17.48 | 30.48 |
| TraesCS3D01G156500.1 | Wheat | nucleus | 14.72 | 30.38 |
| AT1G13930.1 | Thale cress | nucleus | 14.42 | 30.32 |
| Bra016718.1-P | Field mustard | nucleus | 10.12 | 30.0 |
| CDY53944 | Canola | cytosol | 13.19 | 29.05 |
| CDY34552 | Canola | nucleus | 11.04 | 28.12 |
| CDX96875 | Canola | nucleus | 9.82 | 25.4 |
| Solyc05g012570.2.1 | Tomato | nucleus | 22.39 | 18.25 |
| PGSC0003DMT400072972 | Potato | cytosol | 25.46 | 15.06 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G251800.1 | EnsemblPlantsGene:TraesCS4D01G251800 | PANTHER:PTHR35098 | PANTHER:PTHR35098:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4D:-:420144872..420146137
Molecular Weight (calculated)
34479.2 Da
IEP (calculated)
7.099
GRAVY (calculated)
-1.455
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYDGEDDS GRRRPPQQQH RPSGGGSGDL AASAKLVAEA AKAALQDHNL GKVDKGRTAE AAADLLHAAS LYGKLEGKPV GGYLNKAEDY LHKFGAKEGG
101: GGGGKHQTSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDE YKKKPSGGGR YEEDDEYRKK PTSGGGGYGG GRYEEEDYKK KPSGGGRYEE DDYKKKPSGG
201: GRYEEDDYKK KPSGGSHGGK DESEGGGIGD YIKLAQGFMK KQDGEGGHKK TSGHGGGGYG KEENEEDSGK KKHGGRPESG KDESEGSGMA DYLKLAQGFM
301: KKDGEGGSGA GMGDYLKLAE GFMKKR
101: GGGGKHQTSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDE YKKKPSGGGR YEEDDEYRKK PTSGGGGYGG GRYEEEDYKK KPSGGGRYEE DDYKKKPSGG
201: GRYEEDDYKK KPSGGSHGGK DESEGGGIGD YIKLAQGFMK KQDGEGGHKK TSGHGGGGYG KEENEEDSGK KKHGGRPESG KDESEGSGMA DYLKLAQGFM
301: KKDGEGGSGA GMGDYLKLAE GFMKKR
001: MNFISDQVKK LSSSTPEEPD HNKPVEGTET ATRPATNAEL MASAKVVAEA AQAAARNESD KLDKGKVAGA SADILDAAEK YGKFDEKSST GQYLDKAEKY
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
Arabidopsis Description
At1g13930/F16A14.27 [Source:UniProtKB/TrEMBL;Acc:Q9XI93]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.