Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G251800.1 | Wheat | nucleus | 97.3 | 88.34 |
| TraesCS4B01G251800.2 | Wheat | nucleus | 64.19 | 55.39 |
| OQU93026 | Sorghum | nucleus | 67.23 | 47.72 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 19.26 | 45.6 |
| Zm00001d028024_P001 | Maize | extracellular | 66.89 | 45.31 |
| KRH50534 | Soybean | nucleus | 17.23 | 42.86 |
| CDY34553 | Canola | nucleus | 16.22 | 38.71 |
| Os03t0210600-01 | Rice | plasma membrane | 35.47 | 35.0 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 20.27 | 31.41 |
| Bra016719.1-P | Field mustard | nucleus | 16.55 | 31.41 |
| Bra026551.1-P | Field mustard | nucleus | 17.57 | 31.14 |
| CDY45164 | Canola | nucleus | 18.24 | 30.51 |
| AT1G13930.1 | Thale cress | nucleus | 15.88 | 30.32 |
| CDY37195 | Canola | nucleus | 17.57 | 30.23 |
| TraesCS3A01G148700.1 | Wheat | nucleus | 15.88 | 30.13 |
| CDY02995 | Canola | nucleus | 17.91 | 29.94 |
| Bra024775.1-P | Field mustard | nucleus | 17.91 | 29.94 |
| AT2G03440.1 | Thale cress | nucleus | 18.58 | 29.41 |
| Bra016718.1-P | Field mustard | nucleus | 10.81 | 29.09 |
| CDY34552 | Canola | nucleus | 12.16 | 28.12 |
| CDY53944 | Canola | cytosol | 13.18 | 26.35 |
| CDX96875 | Canola | nucleus | 10.47 | 24.6 |
| Solyc05g012570.2.1 | Tomato | nucleus | 24.32 | 18.0 |
| PGSC0003DMT400072972 | Potato | cytosol | 26.69 | 14.34 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G052500.1 | EnsemblPlantsGene:TraesCS4A01G052500 | PANTHER:PTHR35098 | PANTHER:PTHR35098:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4A:-:43367964..43369199
Molecular Weight (calculated)
31048.3 Da
IEP (calculated)
6.599
GRAVY (calculated)
-1.351
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYDGEDDS GRRRPPPQQH RPSGGGSGDL AASAKLVAEA AKAALQDHNL GKVDKGRTAE AAADLLHAAS LYGKLEGKPV GGYLNKAEDY LHKFGAKEGG
101: SGGGKHQPSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDD EYKKPSGGGR YEEDDEYRKK PTSGGGGYGG GRYEEDDYKK KPSGGSHGGK DESEGGGIGD
201: YIELAQGFMK KQDGEGGHKK TSGHGGGGYG KEENEEDSGK KKHGGRPESG KHESEGSGMA DYLKLAQGFM KKDGEGGSGA GMGDYLKLAE GFMKKR
101: SGGGKHQPSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDD EYKKPSGGGR YEEDDEYRKK PTSGGGGYGG GRYEEDDYKK KPSGGSHGGK DESEGGGIGD
201: YIELAQGFMK KQDGEGGHKK TSGHGGGGYG KEENEEDSGK KKHGGRPESG KHESEGSGMA DYLKLAQGFM KKDGEGGSGA GMGDYLKLAE GFMKKR
001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
Arabidopsis Description
NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.