Factsheet for Zm00001d028024_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93026	Sorghum	nucleus	89.02	93.29
TraesCS4D01G251800.1	Wheat	nucleus	50.57	67.79
TraesCS4A01G052500.1	Wheat	nucleus	45.31	66.89
TraesCS4B01G251800.2	Wheat	nucleus	49.2	62.68
Os03t0210600-01	Rice	plasma membrane	40.5	59.0
KRG89504	Soybean	cytosol, mitochondrion, nucleus	12.59	44.0
KRH50534	Soybean	nucleus	11.67	42.86
CDY34553	Canola	nucleus	10.3	36.29
Zm00001d008397_P001	Maize	extracellular	13.04	34.55
VIT_01s0011g00830.t01	Wine grape	nucleus	14.65	33.51
Bra026551.1-P	Field mustard	nucleus	11.67	30.54
AT1G13930.1	Thale cress	nucleus	10.76	30.32
Bra016718.1-P	Field mustard	nucleus	7.55	30.0
CDY37195	Canola	nucleus	11.67	29.65
Bra016719.1-P	Field mustard	nucleus	10.53	29.49
CDY53944	Canola	cytosol	9.61	28.38
CDY45164	Canola	nucleus	11.44	28.25
CDY02995	Canola	nucleus	11.44	28.25
Bra024775.1-P	Field mustard	nucleus	11.44	28.25
CDY34552	Canola	nucleus	8.24	28.12
AT2G03440.1	Thale cress	nucleus	11.9	27.81
CDX96875	Canola	nucleus	7.32	25.4
Solyc05g012570.2.1	Tomato	nucleus	18.08	19.75
PGSC0003DMT400072972	Potato	cytosol	19.45	15.43

Protein Annotations

EMBL:BT063167	EnsemblPlants:Zm00001d028024_P001	EnsemblPlants:Zm00001d028024_T001	EnsemblPlantsGene:Zm00001d028024	EntrezGene:100382106	PANTHER:PTHR35098
PANTHER:PTHR35098:SF1	ProteinID:ONL94496.1	SEG:seg	UniParc:UPI0001948E22	UniProt:C0P4E8	MapMan:35.2

Description

Nodulin-related protein 1

Coordinates

chr1:+:20740613..20741926

Molecular Weight (calculated)

46616.2 Da

IEP (calculated)

6.078

GRAVY (calculated)

-1.616

Length

437 amino acids

Sequence
(BLAST)

001: MASYDGDEDS GRRRPSQHRP SGGGSGDLAS SAKLVAEAAK LALQDHSLEK VDKGRVAGAA ADLLHAASQY GKLEGKPVGG YLEKAEEYLH QYGRKDGAGG
101: KHQGDGEGKY GKNPGGGHGG GRYEEEEGYK KKPSGGRYEE DEYKKKPGGG SGYGGGRYEE EEGYKKKPGS GGYGGGKYED EDDYRKKPSS GSYGGGRYED
201: EDDYKKKPTS GGYGGGRYEQ EDNYKKPTGG GFGDGRYEQE DEYKRPLSGG GSSYGGGRYE DDEYRKKPSG GGYGGGRYED EDDYRKKPSA GGYGGGGRYE
301: DEYSKKPAGG HGGGRYEEDD EYRKPSGGGY GYGASSGGGH GGRYEEEDYK KKPSGHSGGR YEEEEGNKKA SGYSGGKYGK EEDDKKKKHG EDGSESGGIG
401: DYLKLAQGFM KKQDGEGDSG GGMGDYLKLA EGFLKKR

Best Arabidopsis Sequence Match ( AT2G03440.1 )
(BLAST)

001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK

Arabidopsis Description

NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.