Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G251800.1 | Wheat | nucleus | 64.14 | 67.48 |
| TraesCS4A01G052500.1 | Wheat | nucleus | 55.39 | 64.19 |
| Zm00001d028024_P001 | Maize | extracellular | 62.68 | 49.2 |
| OQU93026 | Sorghum | nucleus | 59.18 | 48.68 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 15.74 | 43.2 |
| KRH50534 | Soybean | nucleus | 14.58 | 42.02 |
| Os03t0210600-01 | Rice | plasma membrane | 36.44 | 41.67 |
| CDY34553 | Canola | nucleus | 13.41 | 37.1 |
| Bra026551.1-P | Field mustard | nucleus | 15.74 | 32.34 |
| Bra016719.1-P | Field mustard | nucleus | 14.58 | 32.05 |
| CDY37195 | Canola | nucleus | 15.74 | 31.4 |
| CDY45164 | Canola | nucleus | 16.04 | 31.07 |
| TraesCS3B01G175900.1 | Wheat | nucleus | 14.29 | 31.01 |
| AT1G13930.1 | Thale cress | nucleus | 13.99 | 30.97 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 17.2 | 30.89 |
| CDY02995 | Canola | nucleus | 15.74 | 30.51 |
| Bra024775.1-P | Field mustard | nucleus | 15.74 | 30.51 |
| Bra016718.1-P | Field mustard | nucleus | 9.62 | 30.0 |
| AT2G03440.1 | Thale cress | nucleus | 15.74 | 28.88 |
| CDY34552 | Canola | nucleus | 10.5 | 28.12 |
| CDY53944 | Canola | cytosol | 11.95 | 27.7 |
| CDX96875 | Canola | nucleus | 9.33 | 25.4 |
| Solyc05g012570.2.1 | Tomato | nucleus | 19.53 | 16.75 |
| PGSC0003DMT400072972 | Potato | cytosol | 20.99 | 13.07 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G251800.2 | EnsemblPlantsGene:TraesCS4B01G251800 | PANTHER:PTHR35098 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4B:+:517954577..517955860
Molecular Weight (calculated)
36740.1 Da
IEP (calculated)
5.920
GRAVY (calculated)
-1.654
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYDGEDDS GRRRPPPQQH RPSGGGSGDL AASAKLVAEA AKAALQDHNL GKVDKGRTAE AAADLLHAAS LYGKLEGKPV GGYLNKAEDY LHKFGAKEGG
101: SGGGKHQPSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDD EYKKKPSGDG RYEEDDEYRK KPTGGGGDYG GGRYEEEDEY KKKPSSGGYG GGRYEQEDDF
201: KRPPSGGGGG GYGGGRYEDD DEYKKKPSAG GYGGGGGRYE DEYKKKPTGG HGGGRYEEDD EYKRPSGGSH GGRYEEEDYK KKPSGGGRYE EEDYKKKPSG
301: GGRYEEDDYK KKPSGGSHGG KDESEGGGIG DYLKLAEGFM KKR
101: SGGGKHQPSG HGGSGGRYEE EDEYRKKPTS GGGRYEQDDD EYKKKPSGDG RYEEDDEYRK KPTGGGGDYG GGRYEEEDEY KKKPSSGGYG GGRYEQEDDF
201: KRPPSGGGGG GYGGGRYEDD DEYKKKPSAG GYGGGGGRYE DEYKKKPTGG HGGGRYEEDD EYKRPSGGSH GGRYEEEDYK KKPSGGGRYE EEDYKKKPSG
301: GGRYEEDDYK KKPSGGSHGG KDESEGGGIG DYLKLAEGFM KKR
001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK
Arabidopsis Description
NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.