Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016718.1-P | Field mustard | nucleus | 80.95 | 92.73 |
| CDY34552 | Canola | nucleus | 82.54 | 81.25 |
| CDY34553 | Canola | nucleus | 70.63 | 71.77 |
| AT1G13930.1 | Thale cress | nucleus | 65.08 | 52.9 |
| CDY37195 | Canola | nucleus | 50.0 | 36.63 |
| CDY02995 | Canola | nucleus | 49.21 | 35.03 |
| CDY45164 | Canola | nucleus | 48.41 | 34.46 |
| KRH50534 | Soybean | nucleus | 32.54 | 34.45 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 30.16 | 30.4 |
| CDY53944 | Canola | cytosol | 34.13 | 29.05 |
| HORVU3Hr1G030150.1 | Barley | nucleus | 34.92 | 28.03 |
| TraesCS3D01G156500.1 | Wheat | nucleus | 33.33 | 26.58 |
| TraesCS3B01G175900.1 | Wheat | nucleus | 33.33 | 26.58 |
| TraesCS3A01G148700.1 | Wheat | nucleus | 32.54 | 26.28 |
| EES02656 | Sorghum | cytosol | 30.95 | 24.53 |
| Os10t0330000-01 | Rice | plasma membrane | 28.57 | 21.82 |
| Zm00001d008397_P001 | Maize | extracellular | 28.57 | 21.82 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 32.54 | 21.47 |
| TraesCS4A01G052500.1 | Wheat | nucleus | 24.6 | 10.47 |
| TraesCS4D01G251800.1 | Wheat | nucleus | 25.4 | 9.82 |
| Solyc05g012570.2.1 | Tomato | nucleus | 30.16 | 9.5 |
| TraesCS4B01G251800.2 | Wheat | nucleus | 25.4 | 9.33 |
| OQU93026 | Sorghum | nucleus | 26.19 | 7.91 |
| Zm00001d028024_P001 | Maize | extracellular | 25.4 | 7.32 |
| PGSC0003DMT400072972 | Potato | cytosol | 27.78 | 6.35 |
| Os03t0210600-01 | Rice | plasma membrane | 10.32 | 4.33 |
Protein Annotations
| EnsemblPlants:CDX96875 | EnsemblPlantsGene:GSBRNA2T00103119001 | ncoils:Coil | PANTHER:PTHR35098 | ProteinID:CDX96875 | ProteinID:CDX96875.1 |
| SEG:seg | UniParc:UPI0001BA83CD | MapMan:35.2 | : | : | : |
Description
BnaA08g24180D
Coordinates
chrLK031895:-:1314912..1315679
Molecular Weight (calculated)
13545.4 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.846
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFLSDQVKK LSDSKPDEPD NTKPVEGTET ANRPASPSEL MTSSKVVAEA AQAAARNESD KLDKAKVAGD SADILDVDQE YGRFDKSDAG QYFEKAEKYL
101: KEFESSGAVV TPYTPDIGAP PPSASR
101: KEFESSGAVV TPYTPDIGAP PPSASR
001: MNFISDQVKK LSSSTPEEPD HNKPVEGTET ATRPATNAEL MASAKVVAEA AQAAARNESD KLDKGKVAGA SADILDAAEK YGKFDEKSST GQYLDKAEKY
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
Arabidopsis Description
At1g13930/F16A14.27 [Source:UniProtKB/TrEMBL;Acc:Q9XI93]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.