Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016719.1-P | Field mustard | nucleus | 95.97 | 76.28 |
| CDY34552 | Canola | nucleus | 75.0 | 72.66 |
| CDX96875 | Canola | nucleus | 71.77 | 70.63 |
| AT1G13930.1 | Thale cress | nucleus | 85.48 | 68.39 |
| CDY37195 | Canola | nucleus | 66.13 | 47.67 |
| CDY02995 | Canola | nucleus | 66.94 | 46.89 |
| CDY45164 | Canola | nucleus | 66.13 | 46.33 |
| KRH50534 | Soybean | nucleus | 40.32 | 42.02 |
| CDY53944 | Canola | cytosol | 49.19 | 41.22 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 39.52 | 39.2 |
| HORVU3Hr1G030150.1 | Barley | nucleus | 41.94 | 33.12 |
| TraesCS3D01G156500.1 | Wheat | nucleus | 41.94 | 32.91 |
| TraesCS3B01G175900.1 | Wheat | nucleus | 41.94 | 32.91 |
| TraesCS3A01G148700.1 | Wheat | nucleus | 41.13 | 32.69 |
| Os10t0330000-01 | Rice | plasma membrane | 38.71 | 29.09 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 44.35 | 28.8 |
| EES02656 | Sorghum | cytosol | 34.68 | 27.04 |
| Zm00001d008397_P001 | Maize | extracellular | 34.68 | 26.06 |
| TraesCS4A01G052500.1 | Wheat | nucleus | 38.71 | 16.22 |
| TraesCS4D01G251800.1 | Wheat | nucleus | 38.71 | 14.72 |
| TraesCS4B01G251800.2 | Wheat | nucleus | 37.1 | 13.41 |
| Solyc05g012570.2.1 | Tomato | nucleus | 41.13 | 12.75 |
| OQU93026 | Sorghum | nucleus | 36.29 | 10.79 |
| Zm00001d028024_P001 | Maize | extracellular | 36.29 | 10.3 |
| PGSC0003DMT400072972 | Potato | cytosol | 37.9 | 8.53 |
| Os03t0210600-01 | Rice | plasma membrane | 16.13 | 6.67 |
Protein Annotations
| EnsemblPlants:CDY34553 | EnsemblPlantsGene:GSBRNA2T00056973001 | ncoils:Coil | PANTHER:PTHR35098 | ProteinID:CDY34553 | ProteinID:CDY34553.1 |
| SEG:seg | UniParc:UPI0004EE95B6 | UniProt:A0A078HCR0 | MapMan:35.1 | : | : |
Description
BnaC03g56530DBnaC03g56530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCR0]
Coordinates
chrLK032337:-:32286..33162
Molecular Weight (calculated)
13238.2 Da
IEP (calculated)
5.260
GRAVY (calculated)
-0.814
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFLSDQVKK FSDSKPEEPD HNKPVEGTET ANRPASSSEL MASSKVVAEA AQAAARNESD KLDKAKVAGA SADILDAAQK YGKLDEKSGT GQYLEKAEKY
101: LNDFESSHSS GAAGYAKMAQ GFMK
101: LNDFESSHSS GAAGYAKMAQ GFMK
001: MNFISDQVKK LSSSTPEEPD HNKPVEGTET ATRPATNAEL MASAKVVAEA AQAAARNESD KLDKGKVAGA SADILDAAEK YGKFDEKSST GQYLDKAEKY
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
Arabidopsis Description
At1g13930/F16A14.27 [Source:UniProtKB/TrEMBL;Acc:Q9XI93]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.