CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028024_P001	Maize	extracellular	93.29	89.02
TraesCS4D01G251800.1	Wheat	nucleus	53.72	68.71
TraesCS4A01G052500.1	Wheat	nucleus	47.72	67.23
TraesCS4B01G251800.2	Wheat	nucleus	48.68	59.18
Os03t0210600-01	Rice	plasma membrane	38.37	53.33
KRH50534	Soybean	nucleus	12.47	43.7
KRG89504	Soybean	cytosol, mitochondrion, nucleus	12.71	42.4
EES02656	Sorghum	cytosol	14.15	37.11
CDY34553	Canola	nucleus	10.79	36.29
VIT_01s0011g00830.t01	Wine grape	nucleus	15.83	34.55
Bra026551.1-P	Field mustard	nucleus	12.71	31.74
Bra016718.1-P	Field mustard	nucleus	8.15	30.91
CDY37195	Canola	nucleus	12.71	30.81
AT1G13930.1	Thale cress	nucleus	11.27	30.32
Bra016719.1-P	Field mustard	nucleus	11.27	30.13
Bra024775.1-P	Field mustard	nucleus	12.47	29.38
CDY02995	Canola	nucleus	12.47	29.38
CDY45164	Canola	nucleus	12.47	29.38
CDY53944	Canola	cytosol	10.31	29.05
AT2G03440.1	Thale cress	nucleus	12.71	28.34
CDY34552	Canola	nucleus	8.63	28.12
CDX96875	Canola	nucleus	7.91	26.19
Solyc05g012570.2.1	Tomato	nucleus	18.47	19.25
PGSC0003DMT400072972	Potato	cytosol	19.66	14.88

Protein Annotations

EnsemblPlants:OQU93026	EnsemblPlantsGene:SORBI_3001G461000	EntrezGene:8054215	PANTHER:PTHR35098	PANTHER:PTHR35098:SF1	ProteinID:OQU93026
ProteinID:OQU93026.1	RefSeq:XP_002465659.1	SEG:seg	UniParc:UPI0001A82881	UniProt:A0A1Z5SB28	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:+:73612742..73615164

Molecular Weight (calculated)

44902.3 Da

IEP (calculated)

5.861

GRAVY (calculated)

-1.649

Length

417 amino acids

Sequence
(BLAST)

001: MASYDGDEDS GRRRPSQHHP SGGGSGDLAS SAKLVAEAAR LALQDHNLEK VDKGRVAGAA ADLLHAASQY GKLEGKPVGG YLEKAEEYLH QYGRKDGAGG
101: KHQGVGESKY GKKPGGGHGG GRYEEEEEEE GYKKKPSGGR YEEDEYKKKP GGGGRYEEED GYKKKPSSGG YGGGKYEDED DYRKKPSSGG YGGGRYEDED
201: DYKKKPTSGG YGGGRYEQED DYKKKPTSGG YGGGRYEQQD EYKRPPSGGG SSYGGGRYEE DDEYRKKPSG SYGGGRYEDE DDYRKKPSAG HGGGRYEEDD
301: EYKKPSGGGY GYGASSGGGH GGRYEEEDYK KKPSGHSGGC YEEEEGYKKA SGHSGGKYGK EEDDKKKKHG EDESEGGGIG DYLKLAQGFM KKQDGEGESG
401: GGMGDYLKLA EGFLKKR

Best Arabidopsis Sequence Match ( AT2G03440.1 )
(BLAST)

001: MDFFTDQVKK KFSDKKPESS DPEPNHNKNK PGHTEPTTHK PGHGEPTTHK PVSNTDPTTH RPATNAELMA SAKIVAEAAQ AAARHESDKL DKAKVAGATA
101: DILDAASRYG KLDEKSGVGQ YLEKAEQYLH KYETSHSHSS TGGTGSHGNV GGHGGGAGAP AAKKEDEKSG GGHGFGDYAK MAQGFMK

Arabidopsis Description

NRP1Nodulin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.