Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96875 | Canola | nucleus | 81.25 | 82.54 |
| CDY34553 | Canola | nucleus | 72.66 | 75.0 |
| AT1G13930.1 | Thale cress | nucleus | 69.53 | 57.42 |
| KRH50534 | Soybean | nucleus | 36.72 | 39.5 |
| CDY37195 | Canola | nucleus | 52.34 | 38.95 |
| CDY02995 | Canola | nucleus | 50.78 | 36.72 |
| CDY45164 | Canola | nucleus | 50.0 | 36.16 |
| KRG89504 | Soybean | cytosol, mitochondrion, nucleus | 33.59 | 34.4 |
| CDY53944 | Canola | cytosol | 35.94 | 31.08 |
| HORVU3Hr1G030150.1 | Barley | nucleus | 33.59 | 27.39 |
| TraesCS3B01G175900.1 | Wheat | nucleus | 32.03 | 25.95 |
| TraesCS3D01G156500.1 | Wheat | nucleus | 31.25 | 25.32 |
| TraesCS3A01G148700.1 | Wheat | nucleus | 30.47 | 25.0 |
| Os10t0330000-01 | Rice | plasma membrane | 32.03 | 24.85 |
| VIT_01s0011g00830.t01 | Wine grape | nucleus | 36.72 | 24.61 |
| EES02656 | Sorghum | cytosol | 30.47 | 24.53 |
| Zm00001d008397_P001 | Maize | extracellular | 28.12 | 21.82 |
| TraesCS4A01G052500.1 | Wheat | nucleus | 28.12 | 12.16 |
| TraesCS4D01G251800.1 | Wheat | nucleus | 28.12 | 11.04 |
| Solyc05g012570.2.1 | Tomato | nucleus | 34.38 | 11.0 |
| TraesCS4B01G251800.2 | Wheat | nucleus | 28.12 | 10.5 |
| OQU93026 | Sorghum | nucleus | 28.12 | 8.63 |
| Zm00001d028024_P001 | Maize | extracellular | 28.12 | 8.24 |
| PGSC0003DMT400072972 | Potato | cytosol | 31.25 | 7.26 |
| Os03t0210600-01 | Rice | plasma membrane | 8.59 | 3.67 |
Protein Annotations
| EnsemblPlants:CDY34552 | EnsemblPlantsGene:GSBRNA2T00056972001 | ncoils:Coil | PANTHER:PTHR35098 | ProteinID:CDY34552 | ProteinID:CDY34552.1 |
| SEG:seg | UniParc:UPI0004EDF42A | UniProt:A0A078HA73 | MapMan:35.1 | : | : |
Description
BnaC03g56520DBnaC03g56520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA73]
Coordinates
chrLK032337:-:27576..27962
Molecular Weight (calculated)
13684.6 Da
IEP (calculated)
4.326
GRAVY (calculated)
-0.787
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFLSDQVKK FSDSKPEEPE NTKPVEGTET ANRPASPSEL MTSAKVVAEA AQAAARNESD KLDKAKVAGA SADILDAAEE YGKFDEKSSA GQYFDKAEKY
101: LKDFESSGAV VTPPTDIDAP PPTNQAVR
101: LKDFESSGAV VTPPTDIDAP PPTNQAVR
001: MNFISDQVKK LSSSTPEEPD HNKPVEGTET ATRPATNAEL MASAKVVAEA AQAAARNESD KLDKGKVAGA SADILDAAEK YGKFDEKSST GQYLDKAEKY
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
Arabidopsis Description
At1g13930/F16A14.27 [Source:UniProtKB/TrEMBL;Acc:Q9XI93]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.