Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 28.61 | 86.32 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 21.25 | 66.96 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 9.92 | 54.69 |
| AT3G44750.1 | Thale cress | nucleus | 35.13 | 50.61 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 42.21 | 50.0 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 15.86 | 49.56 |
| EES19871 | Sorghum | nucleus | 41.08 | 48.49 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 42.21 | 47.91 |
| Os05t0597100-01 | Rice | nucleus | 40.23 | 47.81 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 40.79 | 45.71 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 39.66 | 45.31 |
| Bra020209.1-P | Field mustard | nucleus | 37.96 | 44.67 |
| CDY35706 | Canola | nucleus | 37.96 | 44.67 |
| EES20078 | Sorghum | nucleus | 38.81 | 44.63 |
| Bra006629.1-P | Field mustard | nucleus | 34.28 | 44.32 |
| CDY26948 | Canola | nucleus | 32.01 | 43.46 |
| CDX71005 | Canola | nucleus | 33.71 | 43.27 |
| Zm00001d038832_P002 | Maize | nucleus | 36.54 | 43.0 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 18.41 | 42.48 |
| EES04076 | Sorghum | nucleus | 33.14 | 42.24 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 18.13 | 42.11 |
| CDX88790 | Canola | nucleus | 32.58 | 41.82 |
| Zm00001d012092_P001 | Maize | nucleus | 33.14 | 41.05 |
| Bra002425.1-P | Field mustard | nucleus | 29.75 | 40.23 |
| CDX92341 | Canola | nucleus | 29.75 | 40.23 |
| PGSC0003DMT400005672 | Potato | nucleus | 32.29 | 39.31 |
| CDY09158 | Canola | plastid | 37.96 | 38.51 |
| GSMUA_Achr10P... | Banana | plastid | 40.51 | 38.24 |
| Solyc11g066840.1.1 | Tomato | nucleus | 34.28 | 38.17 |
| AT5G22650.1 | Thale cress | nucleus | 32.58 | 37.58 |
| Os01t0909150-00 | Rice | cytosol | 12.46 | 36.97 |
| CDY59279 | Canola | cytosol | 16.43 | 35.8 |
| Zm00001d042433_P001 | Maize | nucleus | 24.93 | 35.77 |
| Bra020206.1-P | Field mustard | cytosol | 18.41 | 35.33 |
| CDY09155 | Canola | cytosol | 18.41 | 35.33 |
| KXG33961 | Sorghum | nucleus | 24.93 | 32.71 |
| PGSC0003DMT400068253 | Potato | cytosol | 31.73 | 31.46 |
| KXG20698 | Sorghum | nucleus | 27.76 | 31.31 |
| Bra020204.1-P | Field mustard | cytosol | 15.01 | 30.46 |
| CDY09153 | Canola | cytosol | 15.01 | 30.46 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 32.01 | 29.89 |
| Zm00001d011139_P005 | Maize | cytosol | 25.21 | 28.62 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 18.41 | 26.64 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 25.5 | 24.73 |
| Zm00001d014548_P002 | Maize | cytosol | 13.31 | 24.48 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 25.78 | 23.76 |
| Os01t0909500-02 | Rice | cytosol | 15.3 | 22.88 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 25.78 | 22.58 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 24.65 | 20.57 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 19.55 | 15.97 |
| CDY59274 | Canola | plastid | 18.98 | 15.58 |
Protein Annotations
| MapMan:12.3.2.2 | Gene3D:2.60.120.340 | ProteinID:CBI17088 | ProteinID:CBI17088.3 | UniProt:D7SN59 | EMBL:FN594957 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR013087 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | TIGR:TC54549 |
| TMHMM:TMhelix | UniParc:UPI0001BE0E5A | ArrayExpress:VIT_06s0061g01240 | EnsemblPlantsGene:VIT_06s0061g01240 | EnsemblPlants:VIT_06s0061g01240.t01 | unigene:Vvi.7188 |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:19041829..19047502
Molecular Weight (calculated)
38867.1 Da
IEP (calculated)
4.525
GRAVY (calculated)
-0.703
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVKA GESFKVKSED DKILHLSQAA LGESKKEKGN ESVPLFLKID QQKLVLGTLL PANIPQLSFD LVFDKEFELS HNWKNGSVFF MGYKSVLPDE
101: YPYHFSFFDF VLCLPIIYLF CVFIYATNCI SFLFNFILRE AFSLTIFRLL IATEEFSEFD DSDSEEDLPV NAIENGKPEP KVEQAKAVPT NANAGKAKVK
201: VEEPPKDAKD EEDDDDDSDE DMVDEDSDED SDEDIMSDAE DGSDEGSESE DEETPKKKVE PGKKRPTESA TKTPVPAKKA KLVSPQKTDG KKGGAHTATP
301: HPNKKAGKTP ASGDKGKGQS PKSGGQVSCK SCSKTFNSEN ALQSHSKAKH GAS
101: YPYHFSFFDF VLCLPIIYLF CVFIYATNCI SFLFNFILRE AFSLTIFRLL IATEEFSEFD DSDSEEDLPV NAIENGKPEP KVEQAKAVPT NANAGKAKVK
201: VEEPPKDAKD EEDDDDDSDE DMVDEDSDED SDEDIMSDAE DGSDEGSESE DEETPKKKVE PGKKRPTESA TKTPVPAKKA KLVSPQKTDG KKGGAHTATP
301: HPNKKAGKTP ASGDKGKGQS PKSGGQVSCK SCSKTFNSEN ALQSHSKAKH GAS
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.