Factsheet for Os05t0597100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 15069638
nucleus: 18022940
nucleus: 18203134
extracellular: 19038476
nucleus: 19621931
nucleus: 23777608
nucleus: 26035336

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G454400.2	Wheat	nucleus	68.69	65.59
EES19871	Sorghum	nucleus	61.28	60.87
Zm00001d038832_P002	Maize	nucleus	57.91	57.33
TraesCS1A01G445700.4	Wheat	nucleus	59.6	57.28
EES20078	Sorghum	nucleus	56.9	55.05
HORVU1Hr1G095140.2	Barley	nucleus	26.94	52.63
VIT_03s0132g00020.t01	Wine grape	nucleus	19.19	48.72
Solyc09g009030.2.1	Tomato	nucleus	43.1	47.58
PGSC0003DMT400006927	Potato	nucleus	41.75	46.1
PGSC0003DMT400021644	Potato	nucleus	44.44	45.99
Solyc10g085560.1.1	Tomato	nucleus	45.12	43.65
VIT_08s0007g03940.t01	Wine grape	nucleus	43.43	43.29
Os01t0909150-00	Rice	cytosol	17.17	42.86
KRH67840	Soybean	nucleus	41.41	42.71
KRH30517	Soybean	nucleus	40.74	41.87
KRH26575	Soybean	nucleus	43.1	41.69
Zm00001d011139_P005	Maize	cytosol	43.1	41.16
KRH22734	Soybean	nucleus	26.26	40.41
VIT_06s0061g01240.t01	Wine grape	nucleus	47.81	40.23
KRH25160	Soybean	nucleus	40.07	39.8
KRG96126	Soybean	nucleus	38.72	39.25
Solyc11g066840.1.1	Tomato	nucleus	39.39	36.91
PGSC0003DMT400005672	Potato	nucleus	34.68	35.52
PGSC0003DMT400068253	Potato	cytosol	35.69	29.78
Os01t0909100-01	Rice	nucleus, peroxisome	24.24	29.51
VIT_06s0009g03080.t01	Wine grape	nucleus	11.11	29.46
GSMUA_Achr8P01440_001	Banana	extracellular	23.23	28.99
Os01t0909500-02	Rice	cytosol	19.87	25.0

Protein Annotations

MapMan:12.3.2.2	Gene3D:2.60.120.340	EntrezGene:4339823	EMBL:AK072845	ProteinID:BAF18437.1	ProteinID:BAS95687.1
ProteinID:EEE64928.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0016891	GO:GO:0031047	GO:GO:0090501	GO:GO:0090502
InterPro:IPR013087	EnsemblPlantsGene:Os05g0597100	EnsemblPlants:Os05t0597100-01	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31802
PANTHER:PTHR31802:SF8	UniProt:Q0DFD6	UniParc:UPI0000E12627	RefSeq:XP_015639422.1	InterPro:Znf_C2H2_type	SEG:seg

Description

HISTONE DEACETYLASE 1Histone H4 deacetylase, Negative regulation of innate immunity (Os05t0597100-01)

Coordinates

chr5:-:29753515..29756314

Molecular Weight (calculated)

32548.6 Da

IEP (calculated)

4.278

GRAVY (calculated)

-1.230

Length

297 amino acids

Sequence
(BLAST)

001: MEFWGLEVKP GQTVKCEPED ERFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD KFPQIQFDLV FDKEFELSHT SKTASVFFSG YKVSQPAEED
101: EMDFDSEEVE DEEEEEKIIP APRANGKVEG KENEQKKQGK TDSSASKSKA AVNDDDDDDD SDEDDSEDED LSPEDDDDDS SEDDSSEDDE DESDEEDTPK
201: KPETGKRKVA EIVLKTPSSD KKAKIATPSG QKTGDKKGVH VATPHPAKQA SKTPVNDKSK EKSPKSGGGS ISCKSCSKTF NSEMALQSHS KAKHPAK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.