Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066840.1.1 | Tomato | nucleus | 65.73 | 73.82 |
| PGSC0003DMT400005672 | Potato | nucleus | 60.11 | 73.79 |
| Bra020209.1-P | Field mustard | nucleus | 35.39 | 42.0 |
| Bra006629.1-P | Field mustard | nucleus | 31.46 | 41.03 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 12.92 | 40.71 |
| AT3G44750.1 | Thale cress | nucleus | 27.53 | 40.0 |
| CDX71005 | Canola | nucleus | 30.62 | 39.64 |
| CDX88790 | Canola | nucleus | 30.62 | 39.64 |
| CDY26948 | Canola | nucleus | 28.93 | 39.62 |
| EES19871 | Sorghum | nucleus | 32.58 | 38.8 |
| Bra002425.1-P | Field mustard | nucleus | 28.37 | 38.7 |
| CDX92341 | Canola | nucleus | 28.09 | 38.31 |
| CDY35706 | Canola | nucleus | 32.02 | 38.0 |
| CDY59279 | Canola | cytosol | 17.13 | 37.65 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 12.08 | 36.75 |
| CDY09158 | Canola | plastid | 35.67 | 36.49 |
| Os05t0597100-01 | Rice | nucleus | 29.78 | 35.69 |
| PGSC0003DMT400021644 | Potato | nucleus | 28.09 | 34.84 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 14.89 | 34.64 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 30.06 | 34.41 |
| AT5G22650.1 | Thale cress | nucleus | 29.49 | 34.31 |
| EES20078 | Sorghum | nucleus | 29.49 | 34.2 |
| PGSC0003DMT400006927 | Potato | nucleus | 25.84 | 34.2 |
| Zm00001d038832_P002 | Maize | nucleus | 28.65 | 34.0 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 28.93 | 33.33 |
| CDY09155 | Canola | cytosol | 17.13 | 33.15 |
| Bra020206.1-P | Field mustard | cytosol | 17.13 | 33.15 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 28.65 | 32.38 |
| CDY09153 | Canola | cytosol | 15.73 | 32.18 |
| Bra020204.1-P | Field mustard | cytosol | 15.73 | 32.18 |
| EES04076 | Sorghum | nucleus | 25.0 | 32.13 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 31.46 | 31.73 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 13.48 | 31.58 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 5.34 | 29.69 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 9.27 | 29.46 |
| Zm00001d012092_P001 | Maize | nucleus | 23.03 | 28.77 |
| Zm00001d042433_P001 | Maize | nucleus | 19.38 | 28.05 |
| Zm00001d011139_P005 | Maize | cytosol | 24.16 | 27.65 |
| Os01t0909150-00 | Rice | cytosol | 8.99 | 26.89 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 18.26 | 26.64 |
| GSMUA_Achr10P... | Banana | plastid | 27.53 | 26.2 |
| Os01t0909500-02 | Rice | cytosol | 15.73 | 23.73 |
| Zm00001d014548_P002 | Maize | cytosol | 12.64 | 23.44 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 24.16 | 22.75 |
| KXG20698 | Sorghum | nucleus | 19.94 | 22.68 |
| KXG33961 | Sorghum | nucleus | 17.13 | 22.68 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 18.54 | 17.23 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 17.42 | 17.03 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 19.94 | 16.78 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 18.82 | 16.63 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 19.38 | 15.97 |
| CDY59274 | Canola | plastid | 16.29 | 13.49 |
Protein Annotations
| EMBL:DQ235179 | EMBL:DQ252501 | EnsemblPlants:PGSC0003DMT400068253 | EnsemblPlantsGene:PGSC0003DMG400026532 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PGSC:PGSC0003DMG400026532 | ProteinID:ABB29936 | ProteinID:ABB29936.1 |
| ProteinID:ABB55378 | ProteinID:ABB55378.1 | SEG:seg | UniParc:UPI000294E4AF | UniProt:M1CIP4 | MapMan:12.3.2.2 |
Description
Deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400026532]
Coordinates
chr11:-:39737590..39742430
Molecular Weight (calculated)
38079.0 Da
IEP (calculated)
5.011
GRAVY (calculated)
-1.022
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNRGCKGIL RETVKGVLGE GKRMMKVRGG GDDAGGRRGV RPAAAVVVAE WGGERAEDGG HEGLDKGSVE VKAGQTLKVK PELFKLIHVS QAAIGEVKDV
101: KEAKYVPLRL TVGENSYVIG TLSAEDRPQL MFDLVFEKEF ELSHGWKNGS VHFIGYTADD PSGDEIDSGD DVFSDEENVL EALNGKLEAD VKDVKPDAKK
201: SAPVKDAKNA KVAESKKEAE SDEDDSDDED DSEDDSDVPL GMDGPEGMDF SGDSEDDDDS EEETPKKVEQ KKRPAPSPQV APGSGKKAKQ ATPDNKSGGK
301: KGPATPFAKQ NGKPAFNGNN KPKTQSPKSG GQFSGNKSNN KNFSGQKNFK GKQGRK
101: KEAKYVPLRL TVGENSYVIG TLSAEDRPQL MFDLVFEKEF ELSHGWKNGS VHFIGYTADD PSGDEIDSGD DVFSDEENVL EALNGKLEAD VKDVKPDAKK
201: SAPVKDAKNA KVAESKKEAE SDEDDSDDED DSEDDSDVPL GMDGPEGMDF SGDSEDDDDS EEETPKKVEQ KKRPAPSPQV APGSGKKAKQ ATPDNKSGGK
301: KGPATPFAKQ NGKPAFNGNN KPKTQSPKSG GQFSGNKSNN KNFSGQKNFK GKQGRK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.